View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_144 (Length: 357)
Name: NF0154_2D_low_144
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_144 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 126 - 336
Target Start/End: Complemental strand, 42764040 - 42763830
Alignment:
| Q |
126 |
ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa |
225 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42764040 |
ggtgtgtgtgcttgtgcataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa |
42763941 |
T |
|
| Q |
226 |
tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763940 |
tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg |
42763841 |
T |
|
| Q |
326 |
ctcccatacct |
336 |
Q |
| |
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||||||||||| |
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|
| T |
42763840 |
ctcccatacct |
42763830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 126 - 336
Target Start/End: Complemental strand, 42806795 - 42806585
Alignment:
| Q |
126 |
ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42806795 |
ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattacgtgtggggcaaaatttctttccattatgtcttacaacaaaagacaa |
42806696 |
T |
|
| Q |
226 |
tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg |
325 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42806695 |
tattataaaaggataaaaaatgtgtacctctcataccaggatgcttaaagttatactccctattgggaagaagcatggttagaaagtgggaagatgcttg |
42806596 |
T |
|
| Q |
326 |
ctcccatacct |
336 |
Q |
| |
|
|||||| |||| |
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|
| T |
42806595 |
ctcccagacct |
42806585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 42806904 - 42806868
Alignment:
| Q |
18 |
catcaaaagatgcaaacatgattcaatcataatcagg |
54 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42806904 |
catcaaaagatgcaaacatgattcaatcataatcagg |
42806868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 42764148 - 42764112
Alignment:
| Q |
18 |
catcaaaagatgcaaacatgattcaatcataatcagg |
54 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
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|
| T |
42764148 |
catcaaaagatgcacacatgattcaatcataatcagg |
42764112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 126 - 336
Target Start/End: Complemental strand, 33050014 - 33049804
Alignment:
| Q |
126 |
ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050014 |
ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattacgtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa |
33049915 |
T |
|
| Q |
226 |
tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg |
325 |
Q |
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|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33049914 |
taatataaaaggataaaaaatgtgtacctcacataccaggatgcttaaagttatactccctattgggaagaagcatggttagaaagtgggaagatgcttg |
33049815 |
T |
|
| Q |
326 |
ctcccatacct |
336 |
Q |
| |
|
|||||| |||| |
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|
| T |
33049814 |
ctcccagacct |
33049804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 33050122 - 33050086
Alignment:
| Q |
18 |
catcaaaagatgcaaacatgattcaatcataatcagg |
54 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
33050122 |
catcaaaagatgcaaacatgattcaatcataatcagg |
33050086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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