View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_148 (Length: 356)
Name: NF0154_2D_low_148
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_148 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 48999424 - 48999738
Alignment:
| Q |
19 |
ccatcaccattacacccgtgttgaaataacatggctttcttccgtcaaacgtctttgcgagaaccgggtccgaccaaaattgttttgtgaaatacaatgt |
118 |
Q |
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| T |
48999424 |
ccatcaccattacacccgtgttaaaataacatggctttcttccgtcaaacgtctttgccagaaccgggtccgaccaaaattgttttgtgaaatacaatgt |
48999523 |
T |
|
| Q |
119 |
gaaatctgtatgacaatattctggaccagccactactttcccttccatgtctacaccccaaagcttagctatatcatcaaccacaacaaggtcagaatct |
218 |
Q |
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| T |
48999524 |
gaaatctgtatgacaatattctggagcagccactactttcccttccatgtctacaccccaaagcttagctatatcatcaactacaacaaggtcagaatct |
48999623 |
T |
|
| Q |
219 |
aaatatatcacacgttgtacattttctggtattgtatctgcaagatatatccttgcataattcaaaggttgatccaatgcttttctaatggactttgata |
318 |
Q |
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| T |
48999624 |
aaatatatcacacgttgtacattttctggtattgtatctgcaagatatatccttgcataattcaaaggttgatccaatgcttttctaatggactttgata |
48999723 |
T |
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| Q |
319 |
tcttaccgcgaacac |
333 |
Q |
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| T |
48999724 |
tcttaccgcgaacac |
48999738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 37501091 - 37501200
Alignment:
| Q |
105 |
gtgaaatacaatgtgaaatctgtatgacaatattctggaccagccactactttcccttccatgtctacaccccaaagcttagctatatcatcaaccacaa |
204 |
Q |
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| T |
37501091 |
gtgaaataccttgtgaaattcgcatgacaatattctggtgcagccactaccttgccacccaagtcaacttcccaaagctttgcaatgtcatcaacaacaa |
37501190 |
T |
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| Q |
205 |
caaggtcaga |
214 |
Q |
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|||| ||||| |
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| T |
37501191 |
caagatcaga |
37501200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 52164152 - 52164188
Alignment:
| Q |
21 |
atcaccattacacccgtgttgaaataacatggctttc |
57 |
Q |
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| T |
52164152 |
atcaccatcacacccgtgttgaaataacaaggctttc |
52164188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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