View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_151 (Length: 351)
Name: NF0154_2D_low_151
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_151 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 26832582 - 26832893
Alignment:
| Q |
18 |
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832582 |
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa |
26832681 |
T |
|
| Q |
118 |
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832682 |
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac |
26832781 |
T |
|
| Q |
218 |
acctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaac |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832782 |
acctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaac |
26832881 |
T |
|
| Q |
318 |
ttaaccctatca |
329 |
Q |
| |
|
|||||||||||| |
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|
| T |
26832882 |
ttaaccctatca |
26832893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 26785864 - 26786160
Alignment:
| Q |
18 |
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
26785864 |
cgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaa |
26785963 |
T |
|
| Q |
118 |
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac |
217 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
26785964 |
catattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcac |
26786063 |
T |
|
| Q |
218 |
acctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaa |
316 |
Q |
| |
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||||||| ||| |||||||||||||||| | |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
26786064 |
acctttgtttcgccatctacggcattcttcctgtaccaactcctgcaattttt-tttgttcacttgccacaatcattcacaatcacc-tttaatacaaa |
26786160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 26791604 - 26791856
Alignment:
| Q |
18 |
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa |
117 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
26791604 |
cgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagcatcaaagatggcaa |
26791703 |
T |
|
| Q |
118 |
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac |
217 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
26791704 |
catattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcac |
26791803 |
T |
|
| Q |
218 |
acctttgcttctccatctacggcattctacttgtaccaactcctgcatttttt |
270 |
Q |
| |
|
||||||| ||| |||||||||||||||| | ||||| |||||||||||||||| |
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|
| T |
26791804 |
acctttgtttcgccatctacggcattcttcctgtacaaactcctgcatttttt |
26791856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 26822505 - 26822749
Alignment:
| Q |
18 |
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||||| |||||||| ||||||||||||||||||||||| |||| |
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|
| T |
26822505 |
cgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatcagcatcaaagatggcaa |
26822604 |
T |
|
| Q |
118 |
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac |
217 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
26822605 |
catattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcac |
26822704 |
T |
|
| Q |
218 |
acctttgcttctccatctacggcattctacttgtaccaactcctg |
262 |
Q |
| |
|
||||||| ||| |||||||||||||||| | |||||||| ||||| |
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|
| T |
26822705 |
acctttgtttcgccatctacggcattcttcctgtaccaattcctg |
26822749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 41546352 - 41546207
Alignment:
| Q |
90 |
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat |
189 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||||||||||| |
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| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
190 |
tgtccctaacttcatactttatattcacacctttgcttctccatct |
235 |
Q |
| |
|
| ||||| | ||||||||||| || | ||||| ||||||||||| |
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|
| T |
41546252 |
tttcccttatctcatactttatgtttatgccttttcttctccatct |
41546207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 77 - 270
Target Start/End: Complemental strand, 41917589 - 41917396
Alignment:
| Q |
77 |
aaaatcaggttctggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttg |
176 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||| |
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|
| T |
41917589 |
aaaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttg |
41917490 |
T |
|
| Q |
177 |
taaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcattctacttgtaccaactcctgcatttttt |
270 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||| |||||||||| |||||||| |
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|
| T |
41917489 |
tatccatttctattgtccctaacttcatactttatattcactcctttgcttgcccatctttggcattctagttgcaccaactcctacatttttt |
41917396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 20239064 - 20239218
Alignment:
| Q |
24 |
tgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaacataat |
123 |
Q |
| |
|
||||||||| |||| ||||||||| |||||| ||||| |||| || | |||||||||||| || ||||||||||||||| || ||||||| | |
|
|
| T |
20239064 |
tgaacaagagcaatttcaggattaccaacaagaaaaggaatggctcttctaagaaaatcaggaggaggactaaaatcagcatcaaatatgacaacatatt |
20239163 |
T |
|
| Q |
124 |
cacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgta |
178 |
Q |
| |
|
|||| || || ||||||||| |||| | ||| || || ||||||||||||||||| |
|
|
| T |
20239164 |
cacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgta |
20239218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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