View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_154 (Length: 347)
Name: NF0154_2D_low_154
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_154 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 25707502 - 25707184
Alignment:
| Q |
1 |
gggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttccttggtcaccaatgtcatagatcctgttgctaatcctcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25707502 |
gggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttccttggtcaccaatgtcatagatcctgttgctaatcctcat |
25707403 |
T |
|
| Q |
101 |
gcctatagagattttatctttaccgtcaccttcttcgccggaatttttcaagctgcatttggtattttcaggtgctggttttctcattagcatgcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25707402 |
gcctatagagattttatctttaccgtcaccttcttcaccggaatttttcaagctgcatttggtattttcaggtgctggttttctcattagcatgcaaaat |
25707303 |
T |
|
| Q |
201 |
ttcttgtgaatttcttgtaaattttctgttttgcccttataaaccaaatagtttgtttatttatccttcaatattttcaggttgggttttcttgtggatt |
300 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25707302 |
tt------------ttgtaaattttctgttttgtccttataaaccaaatagtttgtttatttatccttcaatatttacaggttgggttttcttgtggatt |
25707215 |
T |
|
| Q |
301 |
ttctttcacatgctgcactagttggattcat |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
25707214 |
ttctttcacatgctgcactagttggattcat |
25707184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 33270399 - 33270346
Alignment:
| Q |
278 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggattcat |
331 |
Q |
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||||||||| ||||||||||||||| | |||||||||||||| || |||||||| |
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| T |
33270399 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcat |
33270346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 33270751 - 33270696
Alignment:
| Q |
8 |
tcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttcctt |
63 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||| |||||||||| |
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|
| T |
33270751 |
tcaagagaaattgcaattggacctgtagccgtagtgtcactgctgctatcttcctt |
33270696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 39751605 - 39751655
Alignment:
| Q |
278 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggatt |
328 |
Q |
| |
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||||||||| || |||||||||||||| |||||||||||| | |||||||| |
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|
| T |
39751605 |
caggttggggttccttgtggattttctgtcacatgctgcaattgttggatt |
39751655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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