View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_155 (Length: 347)
Name: NF0154_2D_low_155
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_155 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 140 - 347
Target Start/End: Complemental strand, 736531 - 736324
Alignment:
| Q |
140 |
agaaacacatcattcattgtaatcctagaacaccttttatggaagactagatcctttcagattcccattgaacaatgaattcttctggcaaaatggaatg |
239 |
Q |
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| T |
736531 |
agaaatacatcattcattgtaatcctagaacaccttttatggaagactagatcctttcagattcccattgaacaatgacttcttcaggcaaaatggaatg |
736432 |
T |
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| Q |
240 |
caaatggtgcagcttcaactccttgaaacatcttggatttggacaattaaactccattacactctggcttagttgtgcagccacatgattagatatacaa |
339 |
Q |
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| T |
736431 |
caaatgttgcggcttcaactcctcgaaacatcttggatttggacaattaaactccattacactctggcttagttgtgcagccacatgattagatatacaa |
736332 |
T |
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| Q |
340 |
ttagcaca |
347 |
Q |
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|||||||| |
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| T |
736331 |
ttagcaca |
736324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 736717 - 736583
Alignment:
| Q |
12 |
gacatcaaaatctactagatacctagttacaaaaagatgcatatgagcatagaaactagatcaaaatatagaggaaaatgatgttcatctgatagaaaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
736717 |
gacatcaaaatctactagatacctagttacaaaaagatgcatatgagcatagaaactagatcaaaatatagaagaaaatgatgttcatctgatagaaaac |
736618 |
T |
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| Q |
112 |
ttcattacacatttcatggcatgtgcatagaaaca |
146 |
Q |
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| T |
736617 |
ttcattacacatttcatggcatgtgcatagaaaca |
736583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 1455207 - 1455250
Alignment:
| Q |
304 |
tggcttagttgtgcagccacatgattagatatacaattagcaca |
347 |
Q |
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| T |
1455207 |
tggcttagttgttcagccacatgcttagatatacaattggcaca |
1455250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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