View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_161 (Length: 344)

Name: NF0154_2D_low_161
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_161
NF0154_2D_low_161
[»] chr6 (14 HSPs)
chr6 (54-332)||(16795484-16795762)
chr6 (53-332)||(16656332-16656611)
chr6 (53-332)||(16869553-16869832)
chr6 (105-277)||(17067866-17068038)
chr6 (120-320)||(16779552-16779752)
chr6 (105-332)||(16786328-16786557)
chr6 (106-332)||(16985821-16986047)
chr6 (221-324)||(16842287-16842390)
chr6 (221-277)||(16911704-16911760)
chr6 (24-87)||(16785510-16785573)
chr6 (221-275)||(16837176-16837230)
chr6 (168-277)||(18874825-18874934)
chr6 (24-72)||(17067728-17067776)
chr6 (221-277)||(18807828-18807884)
[»] scaffold0144 (2 HSPs)
scaffold0144 (53-332)||(35810-36089)
scaffold0144 (221-277)||(3423-3479)
[»] scaffold0133 (6 HSPs)
scaffold0133 (121-332)||(6856-7067)
scaffold0133 (105-320)||(11215-11430)
scaffold0133 (242-332)||(16552-16642)
scaffold0133 (45-104)||(16327-16386)
scaffold0133 (42-104)||(6753-6815)
scaffold0133 (24-70)||(11095-11141)
[»] chr3 (4 HSPs)
chr3 (121-320)||(38940939-38941138)
chr3 (105-320)||(7054852-7055067)
chr3 (18-94)||(38943389-38943465)
chr3 (24-77)||(7055149-7055202)
[»] scaffold0256 (2 HSPs)
scaffold0256 (105-332)||(7520-7747)
scaffold0256 (45-104)||(7415-7474)
[»] chr8 (2 HSPs)
chr8 (106-322)||(13376453-13376669)
chr8 (24-106)||(13376317-13376399)
[»] scaffold0230 (1 HSPs)
scaffold0230 (221-305)||(3142-3226)
[»] scaffold0511 (1 HSPs)
scaffold0511 (221-277)||(7823-7879)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 54 - 332
Target Start/End: Original strand, 16795484 - 16795762
Alignment:
Q  54 aggtaattccttgagtttggcaaatttggatatggaaagtgccttaagattattgttgttaacaatggacttcaataactcttcatttcctcctttagca 153  Q
    |||||||||||||||| ||||||||||  ||||| ||||||  ||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  16795484 aggtaattccttgagtctggcaaattttaatatgtaaagtgatttaagattactgttgttaacaatagacttcaataactcttcatttcctccttcagca 16795583  T
Q  154 gaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtgaaaaagttgtggtagcatctccactccttcgactt 253  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |  |||||||||||||||||||| |||||||| ||||    
T  16795584 caaagtgatttaacagatggaaggggtggcaatgtaagtttgggaacatttcttatatctaactctaaaagttgtggtagcatctctactccttcaactt 16795683  T
Q  254 ccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctcggtcacaggttc 332  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  16795684 ccaacaccctctctaaatttggtaggtcatgcagagtcaaatctttcaatgacgtaaaagccttctcggtcgcaggttc 16795762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 53 - 332
Target Start/End: Original strand, 16656332 - 16656611
Alignment:
Q  53 caggtaattccttgagtttggcaaatttggatatggaaagtgccttaagattattgttgttaacaatggacttcaataactcttcatttcctcctttagc 152  Q
    ||||||||||  ||||||||| |||||  ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  16656332 caggtaattcaatgagtttggaaaattcagatatggaaagtgacttaagattactgttgttaacaatagacttcaataactcttcatttcctcctttagc 16656431  T
Q  153 agaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtgaaaaagttgtggtagcatctccactccttcgact 252  Q
    | |||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||| || |  |||||||||||||||||||| ||||||||||||    
T  16656432 aaaaagtgatttaacagatgcaaggggtggcaatgtaagtttggggacatttcttatatctaaatttaaaagttgtggtagcatctctactccttcgact 16656531  T
Q  253 tccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctcggtcacaggttc 332  Q
    ||||| ||||||||||||||||||| | | | ||||||||| | |||||||||||||||||||||||| ||| |||||||    
T  16656532 tccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctcagtcgcaggttc 16656611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 53 - 332
Target Start/End: Complemental strand, 16869832 - 16869553
Alignment:
Q  53 caggtaattccttgagtttggcaaatttggatatggaaagtgccttaagattattgttgttaacaatggacttcaataactcttcatttcctcctttagc 152  Q
    ||||||||||| ||||| |||||||||||||||||  ||||| |||||||||| |||||| ||||||||||||||||||||||||||| ||||||| |||    
T  16869832 caggtaattccatgagtctggcaaatttggatatgtgaagtgacttaagattactgttgtcaacaatggacttcaataactcttcattgcctccttcagc 16869733  T
Q  153 agaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtgaaaaagttgtggtagcatctccactccttcgact 252  Q
    | ||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||  || |  |||||||||||||||||||| ||||||||||||    
T  16869732 ataaaatgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatgtaactttaaaagttgtggtagcatctctactccttcgact 16869633  T
Q  253 tccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctcggtcacaggttc 332  Q
    |||||||||||||||||||| ||||||||| |||||||||  | |||||||||||||||||||||||| ||| |||||||    
T  16869632 tccaacaccctctctaaattcggtaggtcacgcaaagtcatttttttcaatgacgtaaaagccttctcagtcgcaggttc 16869553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 17067866 - 17068038
Alignment:
Q  105 attgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattt 204  Q
    |||||||| || ||||||||||| |||||||||||||||||||| | || ||||||| |  |||||||||||||||||||||||||||||||| ||||||    
T  17067866 attgttgtaaataatggacttcattaactcttcatttcctccttgaacaaaaagtgactcgacagatggaatgggtggcaatgtaagtttggggacattt 17067965  T
Q  205 tttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggta 277  Q
     ||||||  || |  |||||||||| ||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  17067966 cttatatttaactttaaaagttgtgttagcatctctactcctttgacttttaacaccctctctaaatttggta 17068038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 120 - 320
Target Start/End: Original strand, 16779552 - 16779752
Alignment:
Q  120 ggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtga 219  Q
    |||||||||||| ||||||||||||||  || |||||||||| |  |||||||||| ||   |||||| |||||| || |||| | ||||||  || |      
T  16779552 ggacttcaataattcttcatttcctccactaacagaaagtgactccacagatggaagggactgcaatgcaagtttagggacatctgttatatgtaacttc 16779651  T
Q  220 aaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttct 319  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||  ||||||||| | |||||||||| ||||||||||||    
T  16779652 aaaagttggggtagcatctctactccttcgacttccaacaccttctctaaatttggtaagtcacacaaagtcaactttttcaatgacataaaagccttct 16779751  T
Q  320 c 320  Q
    |    
T  16779752 c 16779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 105 - 332
Target Start/End: Original strand, 16786328 - 16786557
Alignment:
Q  105 attgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattt 204  Q
    |||||||| || |||||||||||||||||||||||||| |||  |||||| |||||| | |||| |||||| ||  | || |||||| ||||| ||||||    
T  16786328 attgttgtaaaaaatggacttcaataactcttcatttcttccactagcagtaagtgactcaacatatggaagggacgacagtgtaagcttggggacattt 16786427  T
Q  205 tttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtc--aaatctttcaa 302  Q
     ||||||  || |  ||| ||||||| |||||||| |||||||| ||||||||||||||||| |||||||||| || ||||||||||  |||  ||| ||    
T  16786428 attatatttaacttcaaaggttgtggcagcatctctactccttcaacttccaacaccctctcgaaatttggtaagttatgcaaagtcaaaaaaatttgaa 16786527  T
Q  303 tgacgtaaaagccttctcggtcacaggttc 332  Q
    |||| ||||||||||||| ||| |||||||    
T  16786528 tgacataaaagccttctcagtcgcaggttc 16786557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 332
Target Start/End: Original strand, 16985821 - 16986047
Alignment:
Q  106 ttgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttt 205  Q
    ||||||| | ||||| |||| ||||| |||||||||||||||| | | |||||||| | ||||||||||| || ||| ||||||| ||| |   | |||     
T  16985821 ttgttgtaaccaatgaacttaaataagtcttcatttcctccttgaaccgaaagtgactcaacagatggaagggatggaaatgtaaatttagaggcttttg 16985920  T
Q  206 ttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatga 305  Q
    ||||||| || |  |||||||||| ||||||||| |||||||||||||  |||||||||| ||||||| ||| ||  | ||||||||| |  ||||| ||    
T  16985921 ttatatctaactctaaaagttgtgttagcatctctactccttcgacttttaacaccctctttaaattttgtaagttgtacaaagtcaatttcttcaaaga 16986020  T
Q  306 cgtaaaagccttctcggtcacaggttc 332  Q
     |||||| |||| || ||| |||||||    
T  16986021 tgtaaaaaccttgtcagtcgcaggttc 16986047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 16842287 - 16842390
Alignment:
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctc 320  Q
    |||||||||  | |||||||||||||||  ||| ||||||||||||||||||||| |  |||||||| ||||  |  || ||||||| |||||||||||     
T  16842287 aaagttgtgacaacatctccactccttcagctttcaacaccctctctaaatttggcaaatcatgcaacgtcattttctttaatgacggaaaagccttctt 16842386  T
Q  321 ggtc 324  Q
    ||||    
T  16842387 ggtc 16842390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 16911760 - 16911704
Alignment:
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggta 277  Q
    ||||||||| ||||||||| |||||||||| |  |||||||||||||||||| ||||    
T  16911760 aaagttgtgatagcatctctactccttcgattctcaacaccctctctaaattaggta 16911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 16785510 - 16785573
Alignment:
Q  24 ttctaaggcactcagattaccgagttcaacaggtaattccttgagtttggcaaatttggatatg 87  Q
    |||||| ||||  ||| |||||||||||||||||||||||||||||| ||| || || ||||||    
T  16785510 ttctaaagcaccaagagtaccgagttcaacaggtaattccttgagttcggcgaaatttgatatg 16785573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 16837176 - 16837230
Alignment:
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttgg 275  Q
    |||||||||  | |||||||||||||||  ||| |||||||||||||||||||||    
T  16837176 aaagttgtgacaacatctccactccttcagctttcaacaccctctctaaatttgg 16837230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 18874934 - 18874825
Alignment:
Q  168 agatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctct 267  Q
    |||||||| || ||||||||  |  |||||||||||| | || | |||||   ||||||||||||||||||| || |||||  ||| ||||| |||||||    
T  18874934 agatggaagggatggcaatgccaacttgggaacatttgtaatgttaaagtaggaaagttgtggtagcatctctacgccttcagctttcaacatcctctct 18874835  T
Q  268 aaatttggta 277  Q
    || |||||||    
T  18874834 aagtttggta 18874825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 17067728 - 17067776
Alignment:
Q  24 ttctaaggcactcagattaccgagttcaacaggtaattccttgagtttg 72  Q
    |||||| ||||  ||| ||||||||||||||||||| ||||||||||||    
T  17067728 ttctaaagcaccaagagtaccgagttcaacaggtaactccttgagtttg 17067776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 18807884 - 18807828
Alignment:
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggta 277  Q
    ||||||||||||||||||| || |||||  ||| ||||| ||||||||| |||||||    
T  18807884 aaagttgtggtagcatctctacgccttcagctttcaacatcctctctaagtttggta 18807828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 53 - 332
Target Start/End: Original strand, 35810 - 36089
Alignment:
Q  53 caggtaattccttgagtttggcaaatttggatatggaaagtgccttaagattattgttgttaacaatggacttcaataactcttcatttcctcctttagc 152  Q
    ||||||||||| ||||| | | |||||||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  35810 caggtaattccatgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactcttaatttcctcctttagc 35909  T
Q  153 agaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtgaaaaagttgtggtagcatctccactccttcgact 252  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| || |  |||||||||||||||||||| | ||||||||||    
T  35910 agaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttgttatatctaaatttaaaagttgtggtagcatctctattccttcgact 36009  T
Q  253 tccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctcggtcacaggttc 332  Q
    ||||||||||||||||||||||||| | | | ||||||||| | |||||||||||||| ||||||||| ||| |||||||    
T  36010 tccaacaccctctctaaatttggtaagccttccaaagtcaactttttcaatgacgtaagagccttctcagtcgcaggttc 36089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 3479 - 3423
Alignment:
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggta 277  Q
    ||||||||||||||||||| || |||||  ||| ||||| ||||||||| |||||||    
T  3479 aaagttgtggtagcatctctaccccttcagctttcaacatcctctctaagtttggta 3423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 121 - 332
Target Start/End: Original strand, 6856 - 7067
Alignment:
Q  121 gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtgaa 220  Q
    ||||||||||| ||||||||||||||  ||||||||||||| | ||||||| ||| || || ||||||||||||||| |||||| ||||||| || |  |    
T  6856 gacttcaataattcttcatttcctccactagcagaaagtgactcaacagatagaagggatgtcaatgtaagtttggggacatttgttatatctaaattta 6955  T
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctc 320  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||| |||| | ||||| |||||||||||| |||||    
T  6956 aaagttgtggtagcatctctactccatcaacttccaacaccctctctaaatttggtaagtcatgcaaactcaattttttcagtgacgtaaaagctttctc 7055  T
Q  321 ggtcacaggttc 332  Q
     ||| |||||||    
T  7056 agtctcaggttc 7067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 320
Target Start/End: Original strand, 11215 - 11430
Alignment:
Q  105 attgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattt 204  Q
    |||||||| || ||||||||||||||| |||||||||||||   ||||| ||||||| |  | |||||||| ||   |||||| |||||| || |||| |    
T  11215 attgttgtaaaaaatggacttcaataattcttcatttcctcgactagcataaagtgactccatagatggaagggactgcaatgcaagtttagggacatct 11314  T
Q  205 tttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatg 304  Q
     ||||| | || |  ||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||  |||||| || | ||||| ||    
T  11315 gttatagctaacttcaaaagctgttgtagcatctctactccttcgactttcaacaccctctctaaatttggtaagtcagccaaagtaaattttttcagtg 11414  T
Q  305 acgtaaaagccttctc 320  Q
    ||||||||||||||||    
T  11415 acgtaaaagccttctc 11430  T

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Target: scaffold0133; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 16552 - 16642
Alignment:
Q  242 ctccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctcggtcacaggttc 332  Q
    |||||||||||||||||||| ||||||||||||||| |||   ||||  ||| | ||| |||||||||||||||||||| ||| |||||||    
T  16552 ctccttcgacttccaacaccttctctaaatttggtaagtcccacaaaaccaacttttttaatgacgtaaaagccttctcagtcgcaggttc 16642  T

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Target: scaffold0133; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 16327 - 16386
Alignment:
Q  45 gagttcaacaggtaattccttgagtttggcaaatttggatatggaaagtgccttaagatt 104  Q
    |||||||||||||||||| |||||||||||| |||| ||||| ||||||| |||||||||    
T  16327 gagttcaacaggtaattctttgagtttggcacattttgatatagaaagtgacttaagatt 16386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 6753 - 6815
Alignment:
Q  42 accgagttcaacaggtaattccttgagtttggcaaatttggatatggaaagtgccttaagatt 104  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| ||| |||||    
T  6753 accgagttcaacaggtaattccttgagattggcgaattttgatatagaaagtgacttgagatt 6815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 11095 - 11141
Alignment:
Q  24 ttctaaggcactcagattaccgagttcaacaggtaattccttgagtt 70  Q
    |||||| ||||| ||| ||| ||||||||||||||||||||||||||    
T  11095 ttctaatgcactaagagtactgagttcaacaggtaattccttgagtt 11141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 121 - 320
Target Start/End: Complemental strand, 38941138 - 38940939
Alignment:
Q  121 gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattttttatatcaaagtgaa 220  Q
    ||||||||||| ||||||||||||||  ||||| |||  || | ||||||||||| ||   |||||| ||||||||| |||||| ||||||| || |  |    
T  38941138 gacttcaataattcttcatttcctccactagcaaaaaacgactcaacagatggaagggactgcaatgcaagtttggggacatttcttatatctaacttta 38941039  T
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatgacgtaaaagccttctc 320  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||||| | ||| ||||||||||||||||||||    
T  38941038 aaagttgtggtagcatctctactccttcgacttccaacaccctctctaaatttggtaagtcacacaaagtcaacttttttaatgacgtaaaagccttctc 38940939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 320
Target Start/End: Complemental strand, 7055067 - 7054852
Alignment:
Q  105 attgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattt 204  Q
    |||||||| || ||||||||||||||||||||||||||||||   |||||||||||| | || |||||||| ||  |||||||| ||||| || |||| |    
T  7055067 attgttgtaaaaaatggacttcaataactcttcatttcctccacgagcagaaagtgactcaatagatggaagggacggcaatgtgagtttagggacatct 7054968  T
Q  205 tttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatg 304  Q
     ||| ||| ||||  ||||||||  ||| |||||| ||||| || |||||||||||||||||||||||||||| |  |  ||||||||| | ||||||||    
T  7054967 gttagatctaagtctaaaagttggtgtaacatctctactccatcaacttccaacaccctctctaaatttggtaagctacacaaagtcaattttttcaatg 7054868  T
Q  305 acgtaaaagccttctc 320  Q
    ||| ||||||||||||    
T  7054867 acgcaaaagccttctc 7054852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 38943389 - 38943465
Alignment:
Q  18 aagatgttctaaggcactcagattaccgagttcaacaggtaattccttgagtttggcaaatttggatatggaaagtg 94  Q
    |||||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||  || || |||||| ||||||    
T  38943389 aagatgttctaaggcagtaagagtactgagttcaacaggtaattccttgagtctggtgaagtttgatatgcaaagtg 38943465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 7055202 - 7055149
Alignment:
Q  24 ttctaaggcactcagattaccgagttcaacaggtaattccttgagtttggcaaa 77  Q
    |||||| ||||| ||| ||| ||||||||||||||||||||||||||| |||||    
T  7055202 ttctaaagcactaagagtactgagttcaacaggtaattccttgagttttgcaaa 7055149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 105 - 332
Target Start/End: Original strand, 7520 - 7747
Alignment:
Q  105 attgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacattt 204  Q
    |||||||| || || |||||||||||| ||||||||||||||  || |||||||||| |  |||||||||| ||   |||||| |||||| || |||| |    
T  7520 attgttgtaaaaaaaggacttcaataattcttcatttcctccactaacagaaagtgactccacagatggaagggactgcaatgcaagtttagggacatct 7619  T
Q  205 tttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatg 304  Q
     ||||||| || |  |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||   ||||||||| | ||||||||    
T  7620 gttatatctaacttcaaaagttgtggtagcatctctactccttcggcttccaacaccctctctaaatttggtaaatcggacaaagtcaactttttcaatg 7719  T
Q  305 acgtaaaagccttctcggtcacaggttc 332  Q
    | |||||||||||||| ||| |||||||    
T  7720 atgtaaaagccttctcagtcgcaggttc 7747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 7415 - 7474
Alignment:
Q  45 gagttcaacaggtaattccttgagtttggcaaatttggatatggaaagtgccttaagatt 104  Q
    ||||||||||||||||||| |||||||||||||||| |||||  |||||| |||||||||    
T  7415 gagttcaacaggtaattccatgagtttggcaaatttcgatatacaaagtgacttaagatt 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 13376453 - 13376669
Alignment:
Q  106 ttgttgttaacaatggacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttt 205  Q
    |||||||||| ||||||||||||||||||||||||||||||  || || ||||  | | ||||||||||| ||  | ||||| |||||| || |||  ||    
T  13376453 ttgttgttaaaaatggacttcaataactcttcatttcctccggtaacaaaaaggaactcaacagatggaagggacgacaatgcaagttttgggacacatt 13376552  T
Q  206 ttatatcaaagtgaaaaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatga 305  Q
     ||||   |||    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || | | || ||||| | |||||||||    
T  13376553 ctatacttaagaatgaaagttggggtagcatctccactccttcaacttccaacaccctctctaaatttggtaagttacgtaacgtcaattttttcaatga 13376652  T
Q  306 cgtaaaagccttctcgg 322  Q
    || ||||||||||||||    
T  13376653 cgcaaaagccttctcgg 13376669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 13376317 - 13376399
Alignment:
Q  24 ttctaaggcactcagattaccgagttcaacaggtaattccttgagtttggcaaatttggatatggaaagtgccttaagattat 106  Q
    |||||||| ||| ||| | ||||||||| ||||||||||||||||||||||||| |  |||||| |||||  |||||||||||    
T  13376317 ttctaaggtacttagagtgccgagttcatcaggtaattccttgagtttggcaaagtctgatatgtaaagtaacttaagattat 13376399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 3142 - 3226
Alignment:
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggtaggtcatgcaaagtcaaatctttcaatga 305  Q
    ||||||||||||||||||| || |||||  ||| ||||| ||||||||| |||||||  ||||||| ||| ||||  ||||||||    
T  3142 aaagttgtggtagcatctctacgccttcagctttcaacatcctctctaagtttggtaaatcatgcagagttaaattcttcaatga 3226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 7823 - 7879
Alignment:
Q  221 aaagttgtggtagcatctccactccttcgacttccaacaccctctctaaatttggta 277  Q
    ||||||||||||||||||| || |||||  ||| ||||| ||||||||| |||||||    
T  7823 aaagttgtggtagcatctctacgccttcagctttcaacatcctctctaagtttggta 7879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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