View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_167 (Length: 338)
Name: NF0154_2D_low_167
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_167 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 26915503 - 26915339
Alignment:
| Q |
20 |
gtggtatgccatggagacgagtttatatcatccacgaatatgttgacatagacataatact------taccatattttttcaccaaacaaaactatatac |
113 |
Q |
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| T |
26915503 |
gtggtataccatggagacgagtttatatcatccacgaatatgttgacatagacataatactattacttaccatattttttcaccaaacaaaactatatac |
26915404 |
T |
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| Q |
114 |
ccaataataatacacttgtgaaagagagcaagagtacgatattatgaaatttgaacgtaattgta |
178 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26915403 |
ccaataataatacatttgtgaaagagagcaagagtacgatattatgaaatttgaacgtaattgta |
26915339 |
T |
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