View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_18 (Length: 797)
Name: NF0154_2D_low_18
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 90 - 786
Target Start/End: Original strand, 23030565 - 23031255
Alignment:
| Q |
90 |
ttttgatgtgtaaatgct--aacaatgacatacttcaattttacacgcaaaaaatgttttgccaatttcaaccattttgcatttcacacgatttataagg |
187 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030565 |
ttttgatgtgtaaatgctctaacaatgacatacttcaattttacacgcaaaaaatgttttgccaatttcaaccattttgcatttcacacgatttataac- |
23030663 |
T |
|
| Q |
188 |
aaagcgaaatatatgtgatacacttggcttttaatctaaaaatgttgtgattatatgatgaaaattgcaacaaaatttgcactacatataaagtgatacg |
287 |
Q |
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| T |
23030664 |
-------aatatatgtgataaacttggcttttaatctaaaaatgttgtgattatatgatgaaaattgcaacaaaatttgcactacatataaagtgatacg |
23030756 |
T |
|
| Q |
288 |
taataattatggtgattgtgnnnnnnngtttataggttgtgtgcaaatgggagcaggtggtagagcctctaatcctccatcacaaaggaaaatagagaat |
387 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030757 |
taataattattgtgattgtgtttttttctttataggttgtgtgcaaatgggagcaggtggtagagcctctaatcctccatcacaaaggaaaatagagaat |
23030856 |
T |
|
| Q |
388 |
gatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattccaccacattgttttaaccgttcattgatta |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23030857 |
gatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattccaccacattgttttcaccgttcattgatta |
23030956 |
T |
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| Q |
488 |
gatcattttcctatgtcattgttgaccttaccatagcatcaatccttgtctacatagccacaaattattttcctacccttccacataacctctcattttt |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23030957 |
gatcattttcctatgtcattgttgaccttaccatagcatcaatccttgcctatatagccacaaattactttcctacccttccacataacctctcattttt |
23031056 |
T |
|
| Q |
588 |
ggcgtgggccgtttattgggtcatccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
687 |
Q |
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| T |
23031057 |
ggcgtggcccgtttattgggccatccaaggatgcattctaaccggagtttgggtcattgcacatgaatgtggccatcatgcatttagtaattatcaatgg |
23031156 |
T |
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| Q |
688 |
gtcgacgatttagttggccttgttcttcattcatgtctcttggttccttatttttcgtggaaatatagtcatcgccgccaccactctaacacaggttct |
786 |
Q |
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||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031157 |
gtcgacgatttagttggccttgtccttcattcttgcctcttggtaccttatttttcgtggaaatatagtcatcgccgccaccactctaacacaggttct |
23031255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 23030449 - 23030526
Alignment:
| Q |
17 |
ttagattgtttacgttgtttcatctataaaccataaacgttgaagccaaagtcaccacacgttatcaatgaaattttg |
94 |
Q |
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| T |
23030449 |
ttagattgtttacgttgtttcatctataaaccataaacgttgaagccaaagtcaccacacgttatcaatgaaattttg |
23030526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 687
Target Start/End: Original strand, 50593858 - 50593934
Alignment:
| Q |
611 |
tccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
687 |
Q |
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| T |
50593858 |
tccaaggttgcattctcaccggtgtttgggtgatagctcatgaatgtggtcaccatgcatttagtaactaccaatgg |
50593934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 610 - 786
Target Start/End: Original strand, 37019912 - 37020088
Alignment:
| Q |
610 |
atccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttg |
709 |
Q |
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|||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | || ||| |||||||||| |
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| T |
37019912 |
atccaaggttgcatccttaccggtgtttgggtcattgcacatgagtgtggccaccatgcattcagtgactatcaatggcttgatgatacagttggcctta |
37020011 |
T |
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| Q |
710 |
ttcttcattcatgtctcttggttccttatttttcgtggaaatatagtcatcgccgccaccactctaacacaggttct |
786 |
Q |
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| T |
37020012 |
ttctccactctgcccttcttgtgccttacttttcatggaaatacagccatcgccgccaccattccaacaccggttct |
37020088 |
T |
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