View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_188 (Length: 317)
Name: NF0154_2D_low_188
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_188 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 8358975 - 8359287
Alignment:
| Q |
1 |
caaaggaaaatatggtcccttgacataacttccaatttgatttcaagaaaacacatttataaatgaaaaatatataaatcttgctattaatttttgctga |
100 |
Q |
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| T |
8358975 |
caaaggaaaatatggtcccttgacataact-ccaatttgatttcaagaaaacacatttataaatgaaaaatatataaatcttgctattaatttttgctga |
8359073 |
T |
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| Q |
101 |
cattaattaattttgtaatttcccctaatataaacttgtataggaaaaaagttgcttacttatgaattatgattatgaagctaattccagtattaaaaca |
200 |
Q |
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| T |
8359074 |
cattaattaattttgtaatttcccctaatataaacttgtataggaaaaaatttgcttacttatgaattatgattatgaagctaattccagtattaaaaca |
8359173 |
T |
|
| Q |
201 |
tctttgaaaatgaacaatgttctgatataagnnnnnnnnntctaaagcaaaataaacaggggtatacgtgattggtaatatcactatgctttttgttcta |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8359174 |
tctttgaaaatgaacaatgttctgatataagaaaaaaaaatctaaagcaaaataaacaggggtatacgtgattggtaatatcactatgctttttgttcta |
8359273 |
T |
|
| Q |
301 |
tttaatttcatctc |
314 |
Q |
| |
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||||||||| |||| |
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| T |
8359274 |
tttaatttcttctc |
8359287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 8368527 - 8368615
Alignment:
| Q |
121 |
tcccctaatataaacttgtataggaaaaaagttgcttacttatgaattatgattatgaagctaattccagtattaaaacatctttgaaaatgaaca |
216 |
Q |
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|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368527 |
tcccctaatataaacttgtagaagaaaaaagttgcttacttgtga-------ttatgaagctaattccagtattaaaacatctttgaaaatgaaca |
8368615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 8368159 - 8368196
Alignment:
| Q |
89 |
aatttttgctgacattaattaattttgtaatttcccct |
126 |
Q |
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| T |
8368159 |
aatttttgctgacattaattaattttgtaatttcccct |
8368196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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