View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_189 (Length: 316)

Name: NF0154_2D_low_189
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_189
NF0154_2D_low_189
[»] chr2 (9 HSPs)
chr2 (21-316)||(27257158-27257464)
chr2 (24-168)||(5784762-5784906)
chr2 (218-274)||(29223685-29223742)
chr2 (218-274)||(29336984-29337041)
chr2 (217-260)||(5784674-5784717)
chr2 (274-316)||(13230424-13230466)
chr2 (217-274)||(32522898-32522956)
chr2 (217-274)||(36040397-36040455)
chr2 (206-274)||(28458012-28458081)
[»] chr6 (8 HSPs)
chr6 (21-316)||(24878657-24878944)
chr6 (208-274)||(9932940-9933007)
chr6 (208-274)||(26510447-26510514)
chr6 (208-274)||(26515563-26515630)
chr6 (21-67)||(5671511-5671557)
chr6 (217-274)||(24161390-24161448)
chr6 (218-274)||(3539017-3539074)
chr6 (199-274)||(5989137-5989214)
[»] scaffold0159 (2 HSPs)
scaffold0159 (24-168)||(29137-29281)
scaffold0159 (217-274)||(29034-29092)
[»] chr1 (9 HSPs)
chr1 (21-114)||(432614-432707)
chr1 (126-176)||(432571-432621)
chr1 (217-274)||(41000238-41000296)
chr1 (217-274)||(44505405-44505463)
chr1 (218-274)||(16832917-16832974)
chr1 (218-274)||(33492333-33492390)
chr1 (218-274)||(38122067-38122124)
chr1 (218-274)||(39001316-39001373)
chr1 (218-273)||(12168352-12168408)
[»] chr7 (14 HSPs)
chr7 (209-274)||(12190804-12190870)
chr7 (208-274)||(19472398-19472465)
chr7 (217-260)||(45500860-45500903)
chr7 (217-274)||(12183835-12183893)
chr7 (217-274)||(31664629-31664687)
chr7 (218-316)||(31878571-31878680)
chr7 (218-274)||(2631366-2631423)
chr7 (218-274)||(6172497-6172554)
chr7 (218-274)||(8108023-8108080)
chr7 (218-274)||(10346440-10346497)
chr7 (218-274)||(31158411-31158468)
chr7 (218-274)||(33160152-33160209)
chr7 (199-274)||(2477609-2477685)
chr7 (274-316)||(2797646-2797688)
[»] chr4 (14 HSPs)
chr4 (218-316)||(52618484-52618593)
chr4 (217-274)||(40995684-40995742)
chr4 (274-316)||(55326813-55326855)
chr4 (218-274)||(4839271-4839328)
chr4 (218-274)||(5273686-5273743)
chr4 (218-274)||(22047651-22047708)
chr4 (216-274)||(26373764-26373821)
chr4 (274-309)||(21677757-21677792)
chr4 (218-260)||(323408-323450)
chr4 (217-274)||(35416818-35416876)
chr4 (217-274)||(46692171-46692229)
chr4 (288-316)||(20948796-20948824)
chr4 (206-272)||(26069682-26069750)
chr4 (220-260)||(30218541-30218581)
[»] chr3 (14 HSPs)
chr3 (206-274)||(22097625-22097694)
chr3 (218-274)||(36469570-36469626)
chr3 (218-274)||(3588370-3588427)
chr3 (218-274)||(7653357-7653414)
chr3 (218-274)||(9989366-9989423)
chr3 (218-274)||(10386205-10386262)
chr3 (218-274)||(23411647-23411704)
chr3 (218-274)||(27030818-27030875)
chr3 (218-274)||(52308220-52308277)
chr3 (218-274)||(27850685-27850741)
chr3 (274-316)||(23193960-23194002)
chr3 (217-274)||(48168328-48168386)
chr3 (218-274)||(8615473-8615530)
chr3 (218-274)||(23385366-23385423)
[»] chr5 (13 HSPs)
chr5 (209-260)||(6269851-6269902)
chr5 (208-274)||(33434563-33434630)
chr5 (218-274)||(7314935-7314992)
chr5 (218-274)||(9404394-9404451)
chr5 (218-274)||(11723411-11723468)
chr5 (218-274)||(11766725-11766782)
chr5 (218-274)||(24835705-24835762)
chr5 (218-274)||(30607211-30607268)
chr5 (218-274)||(31845950-31846007)
chr5 (218-274)||(34456267-34456324)
chr5 (218-273)||(16904745-16904801)
chr5 (219-274)||(27167232-27167288)
chr5 (217-274)||(34869881-34869939)
[»] chr8 (14 HSPs)
chr8 (218-274)||(8743418-8743475)
chr8 (218-274)||(9068302-9068359)
chr8 (218-274)||(27347996-27348053)
chr8 (218-274)||(28370063-28370120)
chr8 (218-274)||(28926278-28926335)
chr8 (218-274)||(41577466-41577523)
chr8 (274-316)||(4862033-4862075)
chr8 (274-316)||(22222750-22222792)
chr8 (274-316)||(22229092-22229134)
chr8 (274-316)||(22233934-22233976)
chr8 (222-274)||(3298776-3298829)
chr8 (218-274)||(16580055-16580112)
chr8 (218-274)||(22180571-22180628)
chr8 (276-316)||(17992933-17992973)
[»] scaffold0298 (2 HSPs)
scaffold0298 (274-316)||(12285-12327)
scaffold0298 (274-316)||(16055-16097)
[»] scaffold0124 (1 HSPs)
scaffold0124 (274-316)||(12231-12273)
[»] scaffold0076 (1 HSPs)
scaffold0076 (217-274)||(25785-25843)
[»] scaffold1494 (1 HSPs)
scaffold1494 (218-274)||(1534-1591)
[»] scaffold0336 (1 HSPs)
scaffold0336 (218-259)||(8712-8753)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 27257158 - 27257464
Alignment:
Q  21 caggctcaaggcaaatccagaaatgtcaacaagctaaggttacgtggcagccatccattggagctgcgtgagattttccgcatctagcttaagcgagctg 120  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  27257158 caggctcaagacagatctagaaatgtcaacaagctaaggttacgtggcagccatctattggagctgcgtgagattttccgcatctggcttaagcgagctg 27257257  T
Q  121 agctagcttaagccagattacccagactcagcccatataaatagatttttctcttcnnnnnnnaaggattcactattgtattaaaacattttctaatttt 220  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||       | | | | | | || ||| || |||||||||  ||||    
T  27257258 agctggcttaagccagattacccagactcagcccatataaatagatttttctcttc-tttttcatgaacttattgttttatcaatacattttctggtttt 27257356  T
Q  221 tagagagagtctacgac-ttttctagagagagaaacacaaaa-aaggtagttagg----------acccaagattcaatgagacatcatgaatctaggca 308  Q
    |||||||||  || ||| |||||||||||||||||||||||| ||||||||| ||          |||||||||||| ||||||||||||||||||||||    
T  27257357 tagagagagaatatgacattttctagagagagaaacacaaaacaaggtagtttggaggagatttaacccaagattcattgagacatcatgaatctaggca 27257456  T
Q  309 tggaatct 316  Q
    ||||||||    
T  27257457 tggaatct 27257464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 5784906 - 5784762
Alignment:
Q  24 gctcaaggcaaatccagaaatgtcaacaagctaaggttacgtggcagccatccattggagctgcgtgagattttccgcatctagcttaagcgagctgagc 123  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  5784906 gctcaagccagatctagaaatgtcaacaagctaaggttacgtggcagccatccattagagctgcgtgagatttttcgcatctggcttaagcgagctgagc 5784807  T
Q  124 tagcttaagccagattacccagactcagcccatataaatagattt 168  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  5784806 tggcttaagccagattacccagactcagcccatataaatagattt 5784762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 29223685 - 29223742
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  29223685 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 29223742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 29336984 - 29337041
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  29336984 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 29337041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 5784717 - 5784674
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa 260  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||    
T  5784717 tttttagagagagactagggcttttctagagagagaaacacaaa 5784674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 13230466 - 13230424
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||||| ||||||||||||||||| | ||||||||||    
T  13230466 acccaagattcattgagacatcatgaatcttgtcatggaatct 13230424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 32522898 - 32522956
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||| |||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  32522898 tttttacagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 32522956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 36040455 - 36040397
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||| ||||||||||||||||||  |||||||||||||    
T  36040455 tttttagagagagactatggcttttgtagagagagaaacacaaagcaaggtagttagga 36040397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 28458081 - 28458012
Alignment:
Q  206 acattttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||  |||||||||||||  || | | ||||||||||||||||||||||  |||||||||||||    
T  28458081 acattttctggtttttagagagaggttagggcatttctagagagagaaacacaaagcaaggtagttagga 28458012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 24878657 - 24878944
Alignment:
Q  21 caggctcaaggcaaatccagaaatgtcaacaagctaaggttacgtggcagccatccattggagctgcgtgagattttccgcatctagcttaagcgagctg 120  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||| |                 
T  24878657 caggctcaagccaaatccagaaatgtcaacaagctaaggttgcatggcaaccatccattggagttgcgtgagattttccgcatctgg------------- 24878743  T
Q  121 agctagcttaagccagattacccagactcagcccatataaatagatttttctcttcnnnnnnnaaggattcactattgtattaaaacattttctaatttt 220  Q
          |||||||||||||||||||||||| |||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||    
T  24878744 ------cttaagccagattacccagactcaacccatataaatagatttttctcttctttttttagggattcactattgtattaaaacattttctaatttt 24878837  T
Q  221 tagagagagtctacgacttttctagagagagaaacacaaaa-aaggtagttagg----------acccaagattcaatgagacatcatgaatctaggcat 309  Q
    ||||||||  ||| ||||||||||||||||||||||||||| ||||||||||||          |||||||||||| |||||||||||||||||||||||    
T  24878838 tagagagaaactaggacttttctagagagagaaacacaaaacaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatctaggcat 24878937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 9933007 - 9932940
Alignment:
Q  208 attttctaatttttagagagagtctacgacttttctagagagagaaacacaaaa-aaggtagttagga 274  Q
    |||||||  ||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||    
T  9933007 attttctggtttttagagagagactagggcttttctagagagagaaacacaaaacaaggtagttagga 9932940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 26510514 - 26510447
Alignment:
Q  208 attttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||  ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  26510514 attttctggtttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 26510447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 26515630 - 26515563
Alignment:
Q  208 attttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||  ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  26515630 attttctggtttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 26515563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 5671557 - 5671511
Alignment:
Q  21 caggctcaaggcaaatccagaaatgtcaacaagctaaggttacgtgg 67  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||    
T  5671557 caggctcaagccagatctagaaatgtcaacaagctaaggttacgtgg 5671511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 24161448 - 24161390
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  24161448 tttttagagagagactatggcttttctagagagagaaacacaaagcaaggtagttagga 24161390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 3539017 - 3539074
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  3539017 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 3539074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 5989214 - 5989137
Alignment:
Q  199 tattaaaacattttctaatttttagagagagtctacgac-ttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||| |||||||||  |||||||||||||  || | | |||||||||||||||||||||||  |||||||||||||    
T  5989214 tattaatacattttctggtttttagagagagaatatggcattttctagagagagaaacacaaagcaaggtagttagga 5989137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 29281 - 29137
Alignment:
Q  24 gctcaaggcaaatccagaaatgtcaacaagctaaggttacgtggcagccatccattggagctgcgtgagattttccgcatctagcttaagcgagctgagc 123  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  29281 gctcaagccagatctagaaatgtcaacaagctaaggttacgtggcagccatccattagagctgcgtgagatttttcgcatctggcttaagcgagctgagc 29182  T
Q  124 tagcttaagccagattacccagactcagcccatataaatagattt 168  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  29181 tggcttaagccagattacccagactcagcccatataaatagattt 29137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 29092 - 29034
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  29092 tttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 29034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 432707 - 432614
Alignment:
Q  21 caggctcaaggcaaatccagaaatgtcaacaagctaaggttacgtggcagccatccattggagctgcgtgagattttccgcatctagcttaagc 114  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  432707 caggctcaagccagatctagaaatgtcaacaagctaaggttacgtggaagccatccattggagctgcgtgagattttccgcatctggcttaagc 432614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 432621 - 432571
Alignment:
Q  126 gcttaagccagattacccagactcagcccatataaatagatttttctcttc 176  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  432621 gcttaagccagattacccatactcagcccatataaatagatttttctcttc 432571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 41000296 - 41000238
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  41000296 tttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 41000238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 44505463 - 44505405
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  44505463 tttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 44505405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 16832974 - 16832917
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  16832974 ttttagagagagcctagggcttttctagagagagaaacacaaagtaaggtagttagga 16832917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 33492390 - 33492333
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  33492390 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 33492333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 38122124 - 38122067
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  38122124 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 38122067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 39001373 - 39001316
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  39001373 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 39001316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 12168408 - 12168352
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagg 273  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  ||||||||||||    
T  12168408 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagg 12168352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 12190804 - 12190870
Alignment:
Q  209 ttttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||| |||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  12190804 ttttctgatttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 12190870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 19472465 - 19472398
Alignment:
Q  208 attttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||| |||||||||| || ||| | ||||||||||||||||||||||||  |||||||||||||    
T  19472465 attttctagtttttagagatagactagggcttttctagagagagaaacacaaagcaaggtagttagga 19472398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 45500903 - 45500860
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa 260  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  45500903 tttttagagagagactatgacttttctagagagagaaacacaaa 45500860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 12183835 - 12183893
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  12183835 tttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 12183893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 31664687 - 31664629
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  31664687 tttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 31664629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 31878571 - 31878680
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaaa-aaggtagttagga----------cccaagattcaatgagacatcatgaatctagg 306  Q
    |||||||||||| |||   ||||||||||||||||||||||||  |||||||||||||          ||||||||||| ||||||||||||||||| |     
T  31878571 ttttagagagagactagagcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgt 31878670  T
Q  307 catggaatct 316  Q
    ||||||||||    
T  31878671 catggaatct 31878680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 2631366 - 2631423
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  2631366 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 2631423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 6172497 - 6172554
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  6172497 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 6172554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 8108080 - 8108023
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  8108080 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 8108023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 10346497 - 10346440
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  10346497 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 10346440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 31158468 - 31158411
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  31158468 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 31158411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 33160152 - 33160209
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  33160152 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 33160209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 2477609 - 2477685
Alignment:
Q  199 tattaaaacattttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||| |||||||||  ||||||||||||   || | ||||||||||||||||||||||||  |||||||||||||    
T  2477609 tattaagacattttctggtttttagagagaaaatatggcttttctagagagagaaacacaaagcaaggtagttagga 2477685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 2797688 - 2797646
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||||| ||||||||||||||||| | ||||||||||    
T  2797688 acccaagattcattgagacatcatgaatcttgtcatggaatct 2797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 52618484 - 52618593
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagg----------acccaagattcaatgagacatcatgaatctagg 306  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  ||||||||||||          |||||||||||| ||||||||||||||||| |     
T  52618484 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgt 52618583  T
Q  307 catggaatct 316  Q
    ||||||||||    
T  52618584 catggaatct 52618593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 40995742 - 40995684
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  40995742 tttttagagagagactagggcttttctagagagagaaacacaaatcaaggtagttagga 40995684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 55326813 - 55326855
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||||| |||||||||||||||||||||||| |||||    
T  55326813 acccaagattcattgagacatcatgaatctaggcatgaaatct 55326855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 4839328 - 4839271
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  4839328 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 4839271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 5273743 - 5273686
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  5273743 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 5273686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 22047651 - 22047708
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  22047651 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 22047708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 26373821 - 26373764
Alignment:
Q  216 atttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||  |||||||||||||    
T  26373821 atttttagagaga--ctatgacttttctagagagagaaacacaaagcaaggtagttagga 26373764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 21677792 - 21677757
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcat 309  Q
    |||||||||||| |||||||||||||||||||||||    
T  21677792 acccaagattcattgagacatcatgaatctaggcat 21677757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 323408 - 323450
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa 260  Q
    |||||||||||| ||| | ||||||||||||||||||||||||    
T  323408 ttttagagagagactagggcttttctagagagagaaacacaaa 323450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 35416876 - 35416818
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||| |||||||||||||||||| |||| |||||||||    
T  35416876 tttttagagagagactagggcttttttagagagagaaacacaaagaaagatagttagga 35416818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 46692229 - 46692171
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| ||| | |||||||||||| |||||||||||  |||||||||||||    
T  46692229 tttttagagagagactagggcttttctagagatagaaacacaaagcaaggtagttagga 46692171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 316
Target Start/End: Original strand, 20948796 - 20948824
Alignment:
Q  288 gagacatcatgaatctaggcatggaatct 316  Q
    |||||||||||||||||||||||||||||    
T  20948796 gagacatcatgaatctaggcatggaatct 20948824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 26069682 - 26069750
Alignment:
Q  206 acattttctaatttttagagagagtctacgac-ttttctagagagagaaacacaaa-aaaggtagttag 272  Q
    |||||||||| |||||||||||||  || | | |||||||||||||||||||||||  |||||||||||    
T  26069682 acattttctagtttttagagagaggttagggcattttctagagagagaaacacaaagcaaggtagttag 26069750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 30218581 - 30218541
Alignment:
Q  220 ttagagagagtctacgacttttctagagagagaaacacaaa 260  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  30218581 ttagagagagactagggcttttctagagagagaaacacaaa 30218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 22097625 - 22097694
Alignment:
Q  206 acattttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||  ||||||||||||  ||| ||||||||||||||||||||||||||  |||||||||||||    
T  22097625 acattttctggtttttagagagaaactaggacttttctagagagagaaacacaaagtaaggtagttagga 22097694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 36469626 - 36469570
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaaaaaggtagttagga 274  Q
    |||||||||||| ||| | |||||||||||||||||||||||  |||||||||||||    
T  36469626 ttttagagagagactagggcttttctagagagagaaacacaagcaaggtagttagga 36469570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 3588370 - 3588427
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  3588370 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 3588427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 7653414 - 7653357
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  7653414 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 7653357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 9989366 - 9989423
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  9989366 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 9989423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 10386262 - 10386205
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  10386262 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 10386205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 23411647 - 23411704
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  23411647 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 23411704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 27030875 - 27030818
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  27030875 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 27030818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 52308277 - 52308220
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  52308277 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 52308220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 27850741 - 27850685
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaaaaaggtagttagga 274  Q
    |||||||||||| ||  | |||||||||||||||||||||||  |||||||||||||    
T  27850741 ttttagagagagactgaggcttttctagagagagaaacacaagcaaggtagttagga 27850685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 23193960 - 23194002
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||||| ||||||||||||||||| | ||||||||||    
T  23193960 acccaagattcattgagacatcatgaatcttgtcatggaatct 23194002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 48168386 - 48168328
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacac-aaaaaaggtagttagga 274  Q
    ||||||||||||| ||| | ||||||||||||||||||||| ||  |||||||||||||    
T  48168386 tttttagagagagactagggcttttctagagagagaaacacgaagcaaggtagttagga 48168328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 8615473 - 8615530
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||  ||| | ||||||||||||||||||||||||  |||||||||||||    
T  8615473 ttttagagagaaactagggcttttctagagagagaaacacaaagcaaggtagttagga 8615530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 23385366 - 23385423
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | |||||||||||||||||||| |||  |||||||||||||    
T  23385366 ttttagagagagactagggcttttctagagagagaaacaaaaagcaaggtagttagga 23385423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 6269851 - 6269902
Alignment:
Q  209 ttttctaatttttagagagagtctacgacttttctagagagagaaacacaaa 260  Q
    ||||||| ||||||||||||| ||| | ||||||||||||||||||||||||    
T  6269851 ttttctagtttttagagagagactagggcttttctagagagagaaacacaaa 6269902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 33434563 - 33434630
Alignment:
Q  208 attttctaatttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||  ||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  33434563 attttctggtttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 33434630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 7314935 - 7314992
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  7314935 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 7314992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 9404394 - 9404451
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  9404394 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 9404451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 11723468 - 11723411
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  11723468 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 11723411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 11766725 - 11766782
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  11766725 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 11766782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 24835705 - 24835762
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  24835705 ttttagagagagactagggcttttctagagagagaaacacaaatcaaggtagttagga 24835762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 30607268 - 30607211
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  30607268 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 30607211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 31845950 - 31846007
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  31845950 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 31846007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 34456267 - 34456324
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  34456267 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 34456324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 16904801 - 16904745
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagg 273  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  ||||||||||||    
T  16904801 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagg 16904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 27167288 - 27167232
Alignment:
Q  219 tttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  27167288 tttagagagagactatggcttttctagagagagaaacacaaagcaaggtagttagga 27167232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 34869939 - 34869881
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaaa-aaggtagttagga 274  Q
    |||||||||||||  || | | ||||||||||||||||||||||| |||||||||||||    
T  34869939 tttttagagagaggttagggcatttctagagagagaaacacaaaacaaggtagttagga 34869881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 8743475 - 8743418
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  8743475 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 8743418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 9068359 - 9068302
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  9068359 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 9068302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 27347996 - 27348053
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  27347996 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 27348053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 28370063 - 28370120
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  28370063 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 28370120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 28926335 - 28926278
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  28926335 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 28926278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 41577523 - 41577466
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  41577523 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 41577466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 4862075 - 4862033
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||||| ||||||||||||||||| | ||||||||||    
T  4862075 acccaagattcattgagacatcatgaatcttgtcatggaatct 4862033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 22222792 - 22222750
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    ||||||||||   ||||||||||||||||||||||||||||||    
T  22222792 acccaagatttgttgagacatcatgaatctaggcatggaatct 22222750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 22229134 - 22229092
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    ||||||||||   ||||||||||||||||||||||||||||||    
T  22229134 acccaagatttgttgagacatcatgaatctaggcatggaatct 22229092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 22233976 - 22233934
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    ||||||||||   ||||||||||||||||||||||||||||||    
T  22233976 acccaagatttgttgagacatcatgaatctaggcatggaatct 22233934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 3298776 - 3298829
Alignment:
Q  222 agagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||| ||| | ||||||||||||||||||||||||  |||||||||||||    
T  3298776 agagagagactagggcttttctagagagagaaacacaaagcaaggtagttagga 3298829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 16580055 - 16580112
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| |  |||||||||||||||||||||||  |||||||||||||    
T  16580055 ttttagagagagactagggattttctagagagagaaacacaaagcaaggtagttagga 16580112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 22180571 - 22180628
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||| ||| | |||||||||||||||||||| |||  |||||||||||||    
T  22180571 ttttagagagagactagggcttttctagagagagaaacaaaaagcaaggtagttagga 22180628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 17992933 - 17992973
Alignment:
Q  276 ccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||| ||||||||||||||||| | ||||||||||    
T  17992933 ccaagattcattgagacatcatgaatcttgtcatggaatct 17992973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 12327 - 12285
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||| | ||||||||||||||||||||||| ||||||    
T  12327 acccaagatttattgagacatcatgaatctaggcattgaatct 12285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 16097 - 16055
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||| | ||||||||||||||||||||||| ||||||    
T  16097 acccaagatttattgagacatcatgaatctaggcattgaatct 16055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 12231 - 12273
Alignment:
Q  274 acccaagattcaatgagacatcatgaatctaggcatggaatct 316  Q
    |||||||||| | ||||||||||||||||||||||| ||||||    
T  12231 acccaagatttattgagacatcatgaatctaggcattgaatct 12273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 25843 - 25785
Alignment:
Q  217 tttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    ||||||||||||| |||   ||||||||||||||||||||||||  |||||||||||||    
T  25843 tttttagagagagactagtgcttttctagagagagaaacacaaagcaaggtagttagga 25785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 1534 - 1591
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaaa-aaaggtagttagga 274  Q
    |||||||||||  ||| | ||||||||||||||||||||||||  |||||||||||||    
T  1534 ttttagagagaaactagggcttttctagagagagaaacacaaagcaaggtagttagga 1591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 8712 - 8753
Alignment:
Q  218 ttttagagagagtctacgacttttctagagagagaaacacaa 259  Q
    |||||||||||| ||| | |||||||||||||||||||||||    
T  8712 ttttagagagagactagggcttttctagagagagaaacacaa 8753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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