View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_197 (Length: 311)
Name: NF0154_2D_low_197
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_197 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 7177589 - 7177898
Alignment:
| Q |
1 |
acattgttaagtacattgttaatgcaatgtacgttgagtaactaagcaacctactattcatttatttgttataacatttcaattattgttctaacatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7177589 |
acattgttaagtacattgttaatgcaatgtacattgagtaactaagaaacctacaattcatttatttgttataacatttcaattattgttctaacatatt |
7177688 |
T |
|
| Q |
101 |
gtattgatgcttttgtttgataggaaccacatagaagagggtgaattttgacaacaatattgatcagaaaggagattatatcatttcactttccaataga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7177689 |
gtattgatgcttttgtttgataggaaccacatagaagagggcgaattttgacaacaatattgatcagaaaggagattatatcatttcactttccaataga |
7177788 |
T |
|
| Q |
201 |
tgcaatgactttcccaaacacagaaaatttatcatcaaatcttcatcaatgggaggtagaatgtagaaaaagaagttcgggaacattagatacggtaaaa |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7177789 |
tgcaacgactttcccaaacacagaaaatttatcatcaaatcttcatcaatgggaggtagaatgtagaaaaagaagttcgggaacattagatacggtaaaa |
7177888 |
T |
|
| Q |
301 |
ataatttctt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
7177889 |
ataatttctt |
7177898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 34 - 310
Target Start/End: Original strand, 7167660 - 7167933
Alignment:
| Q |
34 |
ttgagtaactaagcaacctactattcatttatttgttataacatttcaattattgttctaacatattgtattgatgcttttgtttgataggaaccacata |
133 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7167660 |
ttgagtaattaagaaacttactattcatttatttgttataacatttttatgattgttctaacatattgtattgatggttttgtttgataggaaccacata |
7167759 |
T |
|
| Q |
134 |
gaagagggtgaattttgacaacaatattgatcagaaaggagattatatcatttcactttccaatagatgcaatgactttcccaaacacagaaaatttatc |
233 |
Q |
| |
|
||||| || | |||| ||| ||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
7167760 |
gaagaaggcgg---ttgaaaaccatattaatcaacaaggagattatatcattttactttccaatagatgcaacgactttcccaaatacagaaagtttatc |
7167856 |
T |
|
| Q |
234 |
atcaaatcttcatcaatgggaggtagaatgtagaaaaagaagttcgggaacattagatacggtaaaaataatttctt |
310 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||| |||||||| ||| ||| ||||||| ||||||||| |
|
|
| T |
7167857 |
atcaaatcttgatcaatgggaggtacaatgtagaaaaagaacttcgggaaaatttgattgggtaaaattaatttctt |
7167933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1800 times since January 2019
Visitors: 2198