View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_205 (Length: 304)
Name: NF0154_2D_low_205
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_205 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 489568 - 489854
Alignment:
| Q |
4 |
agtttggagttatttagcttttaacgaattgtttattaatttacttgttttacaagcaatcgggctagttagttgcaatttaacctataaaaggttttga |
103 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
489568 |
agttaggagttatttagcttttaacgaattgtttactaatttacttgttttacaagcaatcgggctagttagttgcaatttaacctataaaaggttttga |
489667 |
T |
|
| Q |
104 |
tacatcgttgttaattcaattcattcactcacatcaata---ataattctgccaacgtttcagaaaataataagtctgtcaataatcttcttatggtttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
489668 |
tacatcgttgttaattcaattcattcactcacatcaataataataattctgccaacgtttcaaaaaataataagtctgtcaataatcttcttatggtctg |
489767 |
T |
|
| Q |
201 |
aatcttctttcttagaaattagtttatattgattgagttttaatccaatatagtggtatcatagagcaaataggatccaatggattt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
489768 |
aatcttctttcttagaaattagtttatattgattgagttttaatccaatatagtggtatcatagagcaaataggatccaatggattt |
489854 |
T |
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