View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_209 (Length: 303)

Name: NF0154_2D_low_209
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_209
NF0154_2D_low_209
[»] chr7 (2 HSPs)
chr7 (32-229)||(38824882-38825079)
chr7 (29-114)||(44754274-44754359)
[»] chr1 (2 HSPs)
chr1 (32-229)||(41710188-41710385)
chr1 (43-114)||(37759925-37759996)
[»] chr5 (2 HSPs)
chr5 (35-223)||(3515737-3515925)
chr5 (30-114)||(30642779-30642863)
[»] scaffold0275 (1 HSPs)
scaffold0275 (36-124)||(10346-10434)
[»] chr3 (3 HSPs)
chr3 (36-122)||(46794932-46795018)
chr3 (38-114)||(35182620-35182696)
chr3 (38-114)||(24174557-24174633)
[»] chr4 (2 HSPs)
chr4 (1-31)||(53880360-53880390)
chr4 (1-31)||(53886474-53886504)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 38825079 - 38824882
Alignment:
Q  32 ggccacgtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataatgaggatggttgagatcg 131  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38825079 ggccacgtttagcatggggcaattgtaaaacttccccatcttagactcatctaaattgaatcattgatttaatataaaataatgaggatggttgagatcg 38824980  T
Q  132 tattgtcttttttacctgcaacttgtacggctcatcaacttgaatacatggatttttaaaaagtagaatggaacactaatgtgagggaattgaaatgc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  38824979 tattgtcttttttacctgcaacttgtacggctcatcaacttgagtacatggatttttaaaaagtagaatggaacactaatttgagggaattggaatgc 38824882  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 44754359 - 44754274
Alignment:
Q  29 gaaggccacgtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataat 114  Q
    |||||| | |||| |||||||| ||||| |||| |||| ||  |||||||||| || |||||| | |||||| |||||||||||||    
T  44754359 gaaggcaatgtttagcatggggtaattgcaaaatttcctcaatttaggctcatctagattgaaccgttgattaaatataaaataat 44754274  T

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Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 41710385 - 41710188
Alignment:
Q  32 ggccacgtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataatgaggatggttgagatcg 131  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41710385 ggccacgtttagcatggggcaattgtaaaacttctccatcttaggctcatctaaattgaatcattgatttaatataaaataatgaggatggttgagatcg 41710286  T
Q  132 tattgtcttttttacctgcaacttgtacggctcatcaacttgaatacatggatttttaaaaagtagaatggaacactaatgtgagggaattgaaatgc 229  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  41710285 tattgtcttttttacctgcaacttatacggctcatcaacttgagtacatggatttttaaaaagtagaatggaacactaatttgagggaattggaatgc 41710188  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 37759925 - 37759996
Alignment:
Q  43 gcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataat 114  Q
    |||||||||||||| |||| ||||||| ||||||||||| || |||||| | |||||| |||||||||||||    
T  37759925 gcatggggcaattgcaaaatttccccaacttaggctcatctagattgaaccgttgattaaatataaaataat 37759996  T

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Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 3515925 - 3515737
Alignment:
Q  35 cacgtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataatgaggatggttgagatcgtat 134  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3515925 cacgtttagcatggggtaattgtaaaacttccccatcttaggcttatctaaattgaatcattgatttaatacaaaataatgaggatggttgagatcgtat 3515826  T
Q  135 tgtcttttttacctgcaacttgtacggctcatcaacttgaatacatggatttttaaaaagtagaatggaacactaatgtgagggaattg 223  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||    
T  3515825 tgtcttttttacctgcaacttgtacggctcatcaacttaagtacatggatttttaaaaagtagaatggaacactaatttgagggaattg 3515737  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 30642863 - 30642779
Alignment:
Q  30 aaggccacgtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataat 114  Q
    ||||| |||||| |||||||| |||||||||| ||||||||||||||||||| |||| | || || |||||||||||||| ||||    
T  30642863 aaggcgacgtttagcatggggaaattgtaaaatttccccatcttaggctcatctaaactcaaccactgatttaatataaattaat 30642779  T

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Target: scaffold0275 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 10434 - 10346
Alignment:
Q  36 acgtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataatgaggatggtt 124  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||| |||| | || || |||||||||||||| ||||  ||||||||    
T  10434 acgtttagcatggggaaattgtaaaatttccccatcttaggctcatctaaactcaaccactgatttaatataaattaatagggatggtt 10346  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 46794932 - 46795018
Alignment:
Q  36 acgtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataatgaggatgg 122  Q
    |||||| |||||||| |||||||||| || |||||||||||||||| |||| | || || |||||||||||||| |||| |||||||    
T  46794932 acgtttagcatggggaaattgtaaaattttcccatcttaggctcatctaaactcaaccactgatttaatataaattaataaggatgg 46795018  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 35182696 - 35182620
Alignment:
Q  38 gtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataat 114  Q
    |||| |||||||||||||| |||| ||| ||| ||||||||||| ||||||||| | |||||| |||||||||||||    
T  35182696 gtttagcatggggcaattgcaaaatttctccaacttaggctcatctaaattgaaccgttgattaaatataaaataat 35182620  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 24174557 - 24174633
Alignment:
Q  38 gtttggcatggggcaattgtaaaacttccccatcttaggctcatttaaattgaatcattgatttaatataaaataat 114  Q
    |||| |||||||||||||| |||| ||||||| |||||| |||| || |||||| | |||||| |||||||||||||    
T  24174557 gtttagcatggggcaattgcaaaatttccccaacttaggttcatctagattgaaccgttgattaaatataaaataat 24174633  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 53880360 - 53880390
Alignment:
Q  1 gagatttctctataaattatcttgtgttgaa 31  Q
    |||||||||||||||||||||||||||||||    
T  53880360 gagatttctctataaattatcttgtgttgaa 53880390  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 53886474 - 53886504
Alignment:
Q  1 gagatttctctataaattatcttgtgttgaa 31  Q
    |||||||||||||||||||||||||||||||    
T  53886474 gagatttctctataaattatcttgtgttgaa 53886504  T

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