View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_21 (Length: 779)
Name: NF0154_2D_low_21
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_21 |
 | |
|
| [»] chr3 (13 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 728; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 20 - 779
Target Start/End: Original strand, 27004703 - 27005462
Alignment:
| Q |
20 |
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatatggcttctctatgccacact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27004703 |
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatatggcttctctatgccacact |
27004802 |
T |
|
| Q |
120 |
cccatatccttgatcgcagattcattccccttcctccaacaattggatatcagtttccctaaaacaatatctggtaatgctcatgcttattacaatgctc |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27004803 |
cacatatccttgatcgcagattcattccccttcctccaacaattggatatcagtttccctaaaacaatatctggtaatgctcatgcttattacaatgctc |
27004902 |
T |
|
| Q |
220 |
tacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaactatttgtcaactg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27004903 |
tacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaactatgtgtcaactg |
27005002 |
T |
|
| Q |
320 |
taagtttctacaacaagtttttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005003 |
taagtttctacaacaagtttttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctct |
27005102 |
T |
|
| Q |
420 |
gttagtaattttcaggaagaaaagggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctt |
519 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005103 |
gttagtaattttcaggaagcaaatggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctt |
27005202 |
T |
|
| Q |
520 |
tctcacgtatttctgatttcatgctttgctctttagcacttgaatctcttcctctaaacaaactcgttctccgtggttgtttggattatacatattatgg |
619 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27005203 |
tctcacgtatttctgatctcatgctttgctctttagcacttgaatctcttcctctaaacaaactcgttctccatggttgtttggattatacatattatgg |
27005302 |
T |
|
| Q |
620 |
tatctattatctactatcaaggtctcgttttctacagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgacttgtctgtttat |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27005303 |
tatctattatctactatcaaggtctcgttttctacagcatctagatcttcaatttgcaacttttttgaatgatcagggtatcactgacttgtctgtttat |
27005402 |
T |
|
| Q |
720 |
cttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc |
779 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005403 |
cttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc |
27005462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 340 - 767
Target Start/End: Original strand, 36810275 - 36810700
Alignment:
| Q |
340 |
ttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgttagtaattttcaggaaga |
439 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||| ||||||| | |||||||||||||||||||||| ||||| ||| | ||| |||| |
|
|
| T |
36810275 |
ttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctct--tagaatctttacagaagc |
36810372 |
T |
|
| Q |
440 |
aaagggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctttctcacgtatttctgatttc |
539 |
Q |
| |
|
|| | | |||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||| ||||| ||| | |||||||||||| |
|
|
| T |
36810373 |
aattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcatgatttgtctttttcatgcatttctgatttc |
36810472 |
T |
|
| Q |
540 |
atgctttgctctttagcacttgaatctcttcctctaaacaaactcgttctccgtggttgtttggattatacatattatggtatctattatctactatcaa |
639 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | | |||| | |||| | ||| || ||||||||||| |||| |||| ||||||||| |||| |
|
|
| T |
36810473 |
ttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaa |
36810572 |
T |
|
| Q |
640 |
ggtctcgttttctacagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgacttgtctgtttatcttgctgatttggtgtctat |
739 |
Q |
| |
|
|| ||| |||||||||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
36810573 |
agtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctat |
36810672 |
T |
|
| Q |
740 |
aaacctcagcggttgtcaccagctcacc |
767 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |
|
|
| T |
36810673 |
aaacgtcagcggttgttaccagctcacc |
36810700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 450 - 779
Target Start/End: Complemental strand, 36876303 - 36875974
Alignment:
| Q |
450 |
aataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctttctcacgtatttctgatttcatgctttgct |
549 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||| | |||||||||||| ||||||||| |
|
|
| T |
36876303 |
aataaaattactccatactttgttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgct |
36876204 |
T |
|
| Q |
550 |
ctttagcacttgaatctcttcctctaaacaaactcgttctccgtggttgtttggattatacatattatggtatctattatctactatcaaggtctcgttt |
649 |
Q |
| |
|
|| |||||||||| |||||||| | | |||||| ||||||| |||||| || |||||||||||||| | |||||| ||| | |||| |||| || |
|
|
| T |
36876203 |
ctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttccattatacatattataggatctatcgtctgttgtcaaagtcttcatt |
36876104 |
T |
|
| Q |
650 |
tctacagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgacttgtctgtttatcttgctgatttggtgtctataaacctcagc |
749 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||||||| |||||| ||| |||| || | ||||| |||||||||||||||||| ||| |
|
|
| T |
36876103 |
tctacaacatctagatcttcaagctgcaatgtttttgaatgatcatcgtatcaatgagttgtgtgcatttcttggcgatttggtgtctataaacgtcaat |
36876004 |
T |
|
| Q |
750 |
ggttgtcaccagctcaccaactcagccttc |
779 |
Q |
| |
|
|||||| || |||||||||| |||||||| |
|
|
| T |
36876003 |
ggttgtgacaagctcaccaatgcagccttc |
36875974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 63 - 418
Target Start/End: Complemental strand, 33397618 - 33397263
Alignment:
| Q |
63 |
actaaatccaccttgacctctctcacatgttccaatatggcttctctatgccacactcccatatccttgatcgcagattcattccccttcctccaacaat |
162 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || | ||||||| ||| ||| ||||||||| || || ||||| ||||| ||||||||||||| |
|
|
| T |
33397618 |
actaaatcaaccttgacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaat |
33397519 |
T |
|
| Q |
163 |
tggatatcagtttccctaaaacaatatctggtaatgctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
262 |
Q |
| |
|
|||||||||||| |||||||| ||| | | | | | |||| | |||||| | ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
33397518 |
tggatatcagttaccctaaaataatcaccaatgacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaactccgcaaggttaa |
33397419 |
T |
|
| Q |
263 |
tctctctggtcattcctactttaatgactctttgttttttcaactatttgtcaactgtaagtttctacaacaagtttttatgttcgattgccaattccta |
362 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||||| | | | | | |||||| |||||||||| | | |||||||| | ||||| || ||| |
|
|
| T |
33397418 |
tctctctggtcatttctacgttaatgactccaccttttttctattgtgtatgaactgtgtgtttctacaagagttggttatgttccaatgccatttgcta |
33397319 |
T |
|
| Q |
363 |
acacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctc |
418 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
33397318 |
tcacatgatggtcttgcttctgcaatatgtcagagaccaactttgaattctttctc |
33397263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 72 - 300
Target Start/End: Complemental strand, 36876695 - 36876458
Alignment:
| Q |
72 |
accttgacctctctcacatgttccaatatggcttctctatgccacactcccatatccttgatcgcagattcattccccttcctccaacaattggatatca |
171 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||| ||| ||| ||||||||| || || |||| || || |||||||||||| ||||||||| |
|
|
| T |
36876695 |
accttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggatatca |
36876596 |
T |
|
| Q |
172 |
gtttccctaaaacaatatctggtaatg---------ctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
262 |
Q |
| |
|
||||||| ||||||||| | ||||||| || | ||||| | ||||||||| ||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
36876595 |
gtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaa |
36876496 |
T |
|
| Q |
263 |
tctctctggtcattcctactttaatgactctttgtttt |
300 |
Q |
| |
|
| |||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
36876495 |
tttctctggtaatttctacattaatgactcgttgtttt |
36876458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 239 - 423
Target Start/End: Original strand, 33708173 - 33708357
Alignment:
| Q |
239 |
gctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaactatttgtcaactgtaagtttctacaacaagtt |
338 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||| |||||||| | |||||||| ||||||||||| |||| | | ||||| |||||||| ||| | || |
|
|
| T |
33708173 |
gctttcaaaactccgtaaggttaatctctccggtaattcctacgtaaatgactcattgttttttcagctatgtatgaactgcaagtttctccaagaggtg |
33708272 |
T |
|
| Q |
339 |
tttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgtta |
423 |
Q |
| |
|
|||||||| | || | | | ||||||||| || ||||||||||||||||| ||||||||| | ||| | |||||| ||||||| |
|
|
| T |
33708273 |
cttatgttcaactgtcgttccataacacatgctgttattgcttctgcaatctgccagagaccaagtttaagttctttatctgtta |
33708357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 239 - 415
Target Start/End: Original strand, 33714039 - 33714215
Alignment:
| Q |
239 |
gctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaactatttgtcaactgtaagtttctacaacaagtt |
338 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||| ||||||| | |||||||| ||||||||||| |||| | | ||||| |||||||| || | || |
|
|
| T |
33714039 |
gctttcagaactccgtaaggttaatctctctggtaattcctatgtaaatgactcgttgttttttcagctatgtatgaactgcaagtttctcaaagaggtg |
33714138 |
T |
|
| Q |
339 |
tttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattcttt |
415 |
Q |
| |
|
|||||| | | |||| | | ||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
33714139 |
gttatgtacaaatgccgttccataacacatgctggtattgcttctgcaatctaccagagaccgactttaagttcttt |
33714215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 37579953 - 37580008
Alignment:
| Q |
211 |
acaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctc |
266 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
37579953 |
acaatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaatctc |
37580008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 37580097 - 37580155
Alignment:
| Q |
361 |
taacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctct |
419 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
37580097 |
taacagatgatggtatggcttctgcaatctgccacagaccgactttgacttctttctct |
37580155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 33093050 - 33093107
Alignment:
| Q |
211 |
acaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctc |
268 |
Q |
| |
|
|||||||| || || ||||| |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
33093050 |
acaatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctc |
33093107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 779
Target Start/End: Original strand, 33714423 - 33714548
Alignment:
| Q |
654 |
cagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgacttgtctgtttatcttgctgatttggtgtctataaacctcagcggtt |
753 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| | ||| ||| ||| || | ||||| |||||| ||||||||||| | || |||| |
|
|
| T |
33714423 |
cagcatctagatcttcaatgtgcaaagtttttgaatgatcagcatttcaatgagctgtgtgcatttcttggtgatttagtgtctataaatgtgagtggtt |
33714522 |
T |
|
| Q |
754 |
gtcaccagctcaccaactcagccttc |
779 |
Q |
| |
|
|| || | |||||||| ||||||||| |
|
|
| T |
33714523 |
gtgacgacctcaccaattcagccttc |
33714548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 422
Target Start/End: Original strand, 33093207 - 33093269
Alignment:
| Q |
360 |
ctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgtt |
422 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||| |
|
|
| T |
33093207 |
ctaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgtt |
33093269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 778
Target Start/End: Complemental strand, 33396988 - 33396915
Alignment:
| Q |
705 |
gacttgtctgtttatcttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagcctt |
778 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||| |||||| || |||||| ||| ||||||| |
|
|
| T |
33396988 |
gacttgtgtgtatttcttggtgatttggtgtctataaacctcaatggttgtgacaagctcaacaatgcagcctt |
33396915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 18723550 - 18723631
Alignment:
| Q |
226 |
ttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaact |
307 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| |||||| || |||| ||||||| || |||||||||||||| |
|
|
| T |
18723550 |
ttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattcattgttttttcaact |
18723631 |
T |
|
Back To:
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