View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_211 (Length: 302)
Name: NF0154_2D_low_211
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_211 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 119 - 284
Target Start/End: Original strand, 18542369 - 18542535
Alignment:
| Q |
119 |
atcaaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaat |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18542369 |
atcaaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacgaaatcaagggccttcatgaaat |
18542468 |
T |
|
| Q |
218 |
ccagatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactctctttta |
284 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18542469 |
ccagatgaatgaatgtgtctattcctttctattaagtatgtaaaataaaaccataaactctctttta |
18542535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 18555430 - 18555575
Alignment:
| Q |
122 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
220 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18555430 |
aaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaagggaatcaagggccttcatgaaatcca |
18555529 |
T |
|
| Q |
221 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaa |
266 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18555530 |
gatgaatgaacgtgtctattcctttccattaagtatgtaaaataaa |
18555575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 122 - 287
Target Start/End: Original strand, 18550452 - 18550618
Alignment:
| Q |
122 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
220 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
18550452 |
aaataataatattggttggggatatttgaaaaattagggaggttacaattgtgacataagtagcaaaagtgaagggaatcaagagcctccatgaaatcca |
18550551 |
T |
|
| Q |
221 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactctcttttactc |
287 |
Q |
| |
|
||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||| ||| |||| |
|
|
| T |
18550552 |
gatgaatgaatgtgtctattcattcccataaagcatgtaaaataaaaccataaactctatttcactc |
18550618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 18542264 - 18542350
Alignment:
| Q |
2 |
gcacaggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatg |
88 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18542264 |
gcacaggaggaaatggtagtgaaggaggtgcacaaggtggaggtgaacaaatcgaaggtggaaacgataaagaaagtgaacttgatg |
18542350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 18555321 - 18555408
Alignment:
| Q |
2 |
gcacaggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc |
89 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| ||||||||| |
|
|
| T |
18555321 |
gcacaggaggaaatggcggtgaaggaggtgcacaaggtggaggtagaaaaatcagaggtggaagtgacaaagaaagtggacttgatgc |
18555408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 18550361 - 18550430
Alignment:
| Q |
20 |
gtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc |
89 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||||||||| |
|
|
| T |
18550361 |
gtgaaggaggtgcgcaaggtggaggtggacaaatcgaaggtggaaaagacaaaggaagtggacttgatgc |
18550430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1958 times since January 2019
Visitors: 2201