View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_214 (Length: 296)
Name: NF0154_2D_low_214
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_214 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 30416798 - 30416535
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30416798 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctatgaggacagatattccaatactagcaaaaagtccacagccatttaga |
30416699 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30416698 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
30416599 |
T |
|
| Q |
215 |
ttagtttctcttgcacatgatggtcaggaattatctctagttttgatagcacacttgtccattc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30416598 |
ttagtttctcttgcacatgatggtcaggaattatctctagttttgatagcacacttgtccattc |
30416535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 20810968 - 20810724
Alignment:
| Q |
19 |
tgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaatct |
118 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||||| ||||||| ||| | |||||||||| || |||| ||||||||| ||||| || |||| |
|
|
| T |
20810968 |
tgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgagaatagatattccactataagcatgaagtccacacccattaagtatct |
20810869 |
T |
|
| Q |
119 |
cagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattcttag |
218 |
Q |
| |
|
| ||||||| |||||||| ||| || || |||||||||||||||||||||||||| ||||||||| || ||| || |||||| ||||| ||||| | |
|
|
| T |
20810868 |
ctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatgtccttttgcgtataatcttctaaaccatcatagctgattctcaa |
20810769 |
T |
|
| Q |
219 |
tttctcttgcacatgatggtcaggaattatctctagttttgatag |
263 |
Q |
| |
|
| ||| |||||||| || || |||||| |||||| ||||||||| |
|
|
| T |
20810768 |
tatctgttgcacatcattgttgggaattttctctaattttgatag |
20810724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 15801847 - 15801683
Alignment:
| Q |
17 |
catgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | ||||| || || |||||||||| |||| ||||||||| |||||||| || |
|
|
| T |
15801847 |
catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat |
15801748 |
T |
|
| Q |
117 |
ctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatcctttt |
181 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
15801747 |
ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattctttt |
15801683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 20837323 - 20837164
Alignment:
| Q |
19 |
tgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaatct |
118 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||||| ||||||| ||| | ||||||||||||| |||| ||||||||| ||||| || |||| |
|
|
| T |
20837323 |
tgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgagaatagatattccaatatcagcatgaagtccacacccattaagtatct |
20837224 |
T |
|
| Q |
119 |
cagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatcct |
178 |
Q |
| |
|
| ||||||| |||||||| ||| || || |||||||||||||||||||||||||| |||| |
|
|
| T |
20837223 |
ctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatgtcct |
20837164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 12596598 - 12596389
Alignment:
| Q |
21 |
cattccaagcttgttattcttttcaacttttaagaggctccgctctacgagg-------acagatattccaatactagcaaaaagtccacagccatttag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | ||||| ||| || | |||||||||| || ||| |||| |||||||| |
|
|
| T |
12596598 |
cattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagatcacacccatttag |
12596499 |
T |
|
| Q |
114 |
aatctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttatt |
213 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||||||||||||||| || ||||||||||||||||||| | ||| ||| |||| ||| ||| | |||||| |
|
|
| T |
12596498 |
tatctctgtaacataagcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttccatacgatcccttaaaccttcgaaacttatt |
12596399 |
T |
|
| Q |
214 |
cttagtttct |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
12596398 |
tttagtttct |
12596389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 7165879 - 7166099
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| | ||||||||| |||| |||||||||| |||||||| |
|
|
| T |
7165879 |
atcatgcattccaagcttgttattcttttcaattttcacaaggctccgctctacgaggaccgttattccaatgtcagcataaagtccacaaccatttagt |
7165978 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| | || |||| ||| ||| || |||||||||| |
|
|
| T |
7165979 |
atctcagtaacataggctctatccttgccgataaagaaacaacatatatcaagaaatatatcctttgccatatcatcctttaaaccgtcatagcttattc |
7166078 |
T |
|
| Q |
215 |
ttagtttctcttgcacatgat |
235 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
7166079 |
tcagtttctcttgcacttgat |
7166099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 3408532 - 3408795
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||| | |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
3408532 |
atcatgcattccaagcttgttattcttctcaacttttaggaggctccggtctatgaggaccgctattccaatatcagcataaagtccacagccatttagt |
3408631 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
||||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||||||| | || |||| ||| |||||| |||||||||| |
|
|
| T |
3408632 |
atctctgtaacataggccctgtccttaccaataaagaaacaacaaatgtcaagaaatatatcctttaccatatcatcctttaaaccatcatagcttattc |
3408731 |
T |
|
| Q |
215 |
ttagtttctcttgcacatgatggtcaggaattatctctagttttgatagcacacttgtccattc |
278 |
Q |
| |
|
| || ||||| ||||| |||| | |||||| |||||| |||||||| || ||| ||||||| |
|
|
| T |
3408732 |
tcagcttctcgtgcacttgatcattgggaattctctctaactttgatagtacgcttatccattc |
3408795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 3326198 - 3326415
Alignment:
| Q |
18 |
atgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||| |||||||||| | ||| ||||||||||||||||||| ||| |
|
|
| T |
3326198 |
atgcattccaagcttgttattcttttcaatttttacaaggctccgctctatgagaacacttattccaatatttgcataaagtccacagccatttagtatc |
3326297 |
T |
|
| Q |
118 |
tcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattctta |
217 |
Q |
| |
|
|| ||||| | ||||| |||||||| |||||||||||||||||||||||||||||||| |||| | || |||| ||| |||||||||||| ||||| | |
|
|
| T |
3326298 |
tctgtaacttcggctctatccttgcctataaagaaacaacatatgtcaagaaatatatctttttccatatcatcctttaaaccatcgtagctaattctca |
3326397 |
T |
|
| Q |
218 |
gtttctcttgcacatgat |
235 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
3326398 |
gtttctcttgcacttgat |
3326415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 3263740 - 3263985
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||| |||||||| |||| ||||| | |||||||||| |||| ||||||||||||||| || |
|
|
| T |
3263740 |
atcatgcattccaattttgttattcttttccatttttacaaggctccgttctatgaggatcgctattccaataacagcatgaagtccacagccattaagt |
3263839 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||| |
|
|
| T |
3263840 |
atctctgttacgtaagctctgtctttgccgataaagaaacaacatatgtcaagaaatatatccttttccataccatcctttaaaccatcgtaacttattc |
3263939 |
T |
|
| Q |
215 |
ttagtttctcttgcacatgatggtcaggaattatctctagttttga |
260 |
Q |
| |
|
| || ||||||||||| |||| | |||||| |||||| |||||| |
|
|
| T |
3263940 |
tcagcttctcttgcacttgatcattgggaattctctctaattttga |
3263985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 3268441 - 3268653
Alignment:
| Q |
18 |
atgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagca-aaaagtccacagccatttagaat |
116 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||| |||||| | ||||| |||||||| ||||||||||| |||| |||||| |||| |||| || ||| |
|
|
| T |
3268441 |
atgcattccaagtttgttactcttttcaatttttaggaggcttctctctatgaggacagttattccaataccagcataaaagt-cacaaccatctataat |
3268539 |
T |
|
| Q |
117 |
ctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattctt |
216 |
Q |
| |
|
||| | |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| || ||| ||| |||||| |||||||||||| |
|
|
| T |
3268540 |
ctctgaaacatatgctctgtccttaccaataaagaaacaacatatgtcaagaaatatatccttttctgtatcattctttaaaccatcatagcttattctt |
3268639 |
T |
|
| Q |
217 |
agtttctcttgcac |
230 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
3268640 |
agtttctcatgcac |
3268653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 13786500 - 13786346
Alignment:
| Q |
18 |
atgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaatc |
117 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
13786500 |
atgcattccaagggtgttattgtcctcaacttttaagaggctccgctctatgaggacagctattccaatatcagcacaaagtccacagccatttagtatc |
13786401 |
T |
|
| Q |
118 |
tcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaata |
172 |
Q |
| |
|
|| |||||||| ||| |||||| || |||||||||||||||||||||||||||| |
|
|
| T |
13786400 |
tctgtaacataggctttgtcctcaccaataaagaaacaacatatgtcaagaaata |
13786346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 3287667 - 3287879
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| ||||||||||||||||||||| | ||||||| | |||| |||||||||||||||||| |
|
|
| T |
3287667 |
atcatgcatttcaagcttgttataattgtcaacttttaggaggctccgctctacgaggactgttattccagtgtcagcatcaagtccacagccatttagt |
3287766 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
||||| || ||||| | ||||||||| || |||||||||||||| |||||||||||||||||||||| | || | | | ||| ||||| |||||||||| |
|
|
| T |
3287767 |
atctctgtgacataggttctgtccttaccaataaagaaacaacaaatgtcaagaaatatatccttttccatatcttgatttaacccatcatagcttattc |
3287866 |
T |
|
| Q |
215 |
ttagtttctcttg |
227 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
3287867 |
tcagtttttcttg |
3287879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 3399832 - 3399999
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||| | ||||||||||||| |||| ||||||||| |||| || |
|
|
| T |
3399832 |
atcatgcattccaagcttgttattcttttcgacttttaggaggctgcgctctatgagaatagatattccaatatcagcatgaagtccacatgcattaagt |
3399931 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttg |
182 |
Q |
| |
|
||||| ||||||| |||||||| ||| || || |||||||||||||||||||||||||| |||||||| |
|
|
| T |
3399932 |
atctctgtaacatcagctctgttctttccaatcaagaaacaacatatgtcaagaaatatgtccttttg |
3399999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 3392798 - 3393007
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||| | ||||| | || | |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
3392798 |
atcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcatgaagtccacaaccatttagt |
3392897 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| | ||| ||| |||| ||||| |||| ||| |
|
|
| T |
3392898 |
atctttgtaacataagctctatccttgccgataaagaaacaacagacatcaagaaatatatccttttccatacgatcgcttaaaccattaaagctaattt |
3392997 |
T |
|
| Q |
215 |
ttagtttctc |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
3392998 |
ttagtttctc |
3393007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 31174716 - 31174453
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| |||||| ||||| | ||||||| |||||||||| |||| ||| ||||||||||| || |
|
|
| T |
31174716 |
atcatgcatttgaagcttgttatttttatcaacttttatgaggctgcgctcaatgaggacaactattccaatatcagcatgaagcccacagccattaagt |
31174617 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
||||| ||||||| |||||||| ||| || || |||||||||||||||||||||||||||||||||| || ||| || || |||||||| |||| |
|
|
| T |
31174616 |
atctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttcagtataatcttctaagccgtcgtagctgattc |
31174517 |
T |
|
| Q |
215 |
ttagtttctcttgcacatgatggtcaggaattatctctagttttgatagcacacttgtccattc |
278 |
Q |
| |
|
| ||||||| |||||| |||| || |||||| |||||| ||||||||| ||||| ||||||| |
|
|
| T |
31174516 |
tcagtttctgttgcacttgattgttgggaattttctctaattttgatagtgcacttttccattc |
31174453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 3363083 - 3362876
Alignment:
| Q |
17 |
catgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaat |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| | ||||| | || | |||||||||| |||| ||||||||| |||||||| || |
|
|
| T |
3363083 |
catgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcattaagtccacaaccatttagtat |
3362984 |
T |
|
| Q |
117 |
ctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattctt |
216 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||||||| || | ||||||||||||| ||||| | ||| ||| ||| |||||| |||||||| || |
|
|
| T |
3362983 |
ctttgtaacataagctctatccttaccgataaagaaacagcagacatcaagaaatatattcttttccatacgatcctttaaaccatcaaagcttattttt |
3362884 |
T |
|
| Q |
217 |
agtttctc |
224 |
Q |
| |
|
||| |||| |
|
|
| T |
3362883 |
agtatctc |
3362876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 13807760 - 13807603
Alignment:
| Q |
17 |
catgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaat |
116 |
Q |
| |
|
||||||||||||| || | ||||||||| ||||||| ||||||||||||| ||||| || |||||| ||| |||| ||||||||| |||| |||||| |
|
|
| T |
13807760 |
catgcattccaagtttatcattcttttcgacttttagaaggctccgctctatgaggatagttattcccatatcagcattaagtccacaaccatctagaat |
13807661 |
T |
|
| Q |
117 |
ctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatata |
174 |
Q |
| |
|
||| | |||||| ||||| | ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
13807660 |
ctctgaaacataggctctcttctttccgataaagaaacaacaaatgtcaagaaatata |
13807603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 3313715 - 3313506
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||| ||||| | || || | |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
3313715 |
atcatgcattccaagcttgttatacttttcaatttttattaggcttcgctcaatcagcactgttattccaatatcagcatgaagtccacaaccatttagt |
3313616 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
|| | || ||||| ||||| ||||| ||||||||||||||||| | ||||||||||||||||||| | || ||| |||| ||| || |||||||| |
|
|
| T |
3313615 |
atatttgtgacatatgctctatccttaccgataaagaaacaacacacatcaagaaatatatccttttccatatgatcccttaaaccgtcaaagcttattt |
3313516 |
T |
|
| Q |
215 |
ttagtttctc |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
3313515 |
ttagtttctc |
3313506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 7468 - 7731
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
7468 |
atcatgcattccaagcttgttattcttttcgacttttagaaggctcctctctatgaggacagctattccaatatcagcaaaaagtccacaaccatttagt |
7567 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||||| |||||||||||| |||||| | | | || | | |||||| |||||||||| |
|
|
| T |
7568 |
atctcggtaacatagtctttgtccttgccgataaagaaacaacatacatcaagaaatatagcctttttcgtgtcttctgtcaaaccatcatagcttattc |
7667 |
T |
|
| Q |
215 |
ttagtttctcttgcacatgatggtcaggaattatctctagttttgatagcacacttgtccattc |
278 |
Q |
| |
|
| |||||||||||||| | | | |||||| | |||| |||||||||||||||| ||||||| |
|
|
| T |
7668 |
tcagtttctcttgcacttcttcatggggaattttttctaattttgatagcacacttttccattc |
7731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 32412175 - 32412438
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| ||||| || |||||||| || | ||||||||| |||| ||||||||| |||||||| |
|
|
| T |
32412175 |
atcatgcattccaagtttgttattcttttcaatttttacaaggcttcgttctacgagaaccgttattccaatgtcagcataaagtccacgcccatttagt |
32412274 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttttgcttaccatcacttagaccatcgtagcttattc |
214 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| | || |||| ||| ||| || |||||||||| |
|
|
| T |
32412275 |
atcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattc |
32412374 |
T |
|
| Q |
215 |
ttagtttctcttgcacatgatggtcaggaattatctctagttttgatagcacacttgtccattc |
278 |
Q |
| |
|
||||||||||||| || || | | ||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
32412375 |
ttagtttctcttgtacttggtcattaggaattctctctagttttgacaatacacttgtccattc |
32412438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 6907062 - 6907226
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||| |||| ||||||||||||||| || ||||| |
|
|
| T |
6907062 |
atcatgcattccaagcttgttattcttttcaacttttaaaaggctcctctctatgaggacagctattcctataccagcaaaaagtccacaaccgtttagt |
6907161 |
T |
|
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatcctt |
179 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
6907162 |
atctcggtaacatagtctctgtccttgccgataaagaaacaacatacatcaagaaatatagcctt |
6907226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 14768129 - 14768296
Alignment:
| Q |
15 |
atcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttaga |
114 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
14768129 |
atcatgcatttgaagcttgttattctttacaacttttaagaggctccgttctatgaggacagatattccaatatcagcataaagtccacatccatttaat |
14768228 |
T |
|
| Q |
115 |
atctcagtaac-ataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatcctttt |
181 |
Q |
| |
|
||||| ||||| || ||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14768229 |
atctctgtaacgttaggctctatccttgccaataaagaaaaaacatatgtcaagaaatatatcctttt |
14768296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 8372957 - 8373108
Alignment:
| Q |
30 |
cttgttattcttttcaacttttaagaggctccgctctacgaggacagatattccaatactagcaaaaagtccacagccatttagaatctcagtaacataa |
129 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||||| || ||||||| ||||||| |||| ||||||||| ||||| || ||||| || |||| | |
|
|
| T |
8372957 |
cttgttattcttatcaacttttatgaggctacgctctataagaacagatactccaatatcagcatgaagtccacaaccattaaggatctctgtgacatca |
8373056 |
T |
|
| Q |
130 |
gctctgtccttgccgataaagaaacaacatatgtcaagaaatatatcctttt |
181 |
Q |
| |
|
|||||| ||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
8373057 |
actctgttctttccaatgaagaaacaacatatgtcaagaaatatatcctttt |
8373108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 31060164 - 31060229
Alignment:
| Q |
115 |
atctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatccttt |
180 |
Q |
| |
|
||||| ||||||| |||||||| ||| || || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
31060164 |
atctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaaaaaatatatccttt |
31060229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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