View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_215 (Length: 294)
Name: NF0154_2D_low_215
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_215 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 15807086 - 15807361
Alignment:
| Q |
2 |
ccaatctggtaatgattagtgtctcatggttgcaggaaggagagcttacagagaaacatactaaaagaagtgatgccaaggagctacagaattactacca |
101 |
Q |
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| T |
15807086 |
ccaagctggtaattatgagtgtctcatggttgcaggaaggagagcttacagaaaaacatactaaaagaagtgatgccaaggagctacagaattactacca |
15807185 |
T |
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| Q |
102 |
atatttttacgagaaaagaatccgggatggtgaatttactaaaaaaccgtaaggcttgattgatcttactttaacttgctcttgcacattgtgtgaatca |
201 |
Q |
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| T |
15807186 |
atatttctacgagaagagaatccgggatggtgaatttacgaaaaaaccgtaaggcttgattgatcttacttaaacttgctcttgcacgttgtgtgaatca |
15807285 |
T |
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| Q |
202 |
agttattttacaattgtcttatcttctgatattacttctgtagggaggaaatggttaggaacgttcagattgcaact |
278 |
Q |
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| T |
15807286 |
tatgattttacatttatcttatcttctgatgct-gttttgtagggaggaaatggttaggaacgttcagattgcaact |
15807361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 278
Target Start/End: Original strand, 45929408 - 45929624
Alignment:
| Q |
63 |
taaaagaagtgatgccaaggagctacagaattactaccaatatttttacgagaaaagaatccgggatggtgaatttactaaaaaaccgtaaggcttgatt |
162 |
Q |
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| T |
45929408 |
taaaagaagtgatgccaaggagctacagagttactaccaatttttctacgagaagagaatccaggatggtgaaaatactaaaaaaccataaggcttgatt |
45929507 |
T |
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| Q |
163 |
gatcttactttaacttgctcttgcacattgtgtgaatcaagttattttacaattgtctta-tcttctgatattacttctgtagggaggaaatggttagga |
261 |
Q |
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| T |
45929508 |
gatcttgcttaaacttgctctctcatgttgtgtgtatcacatgattttatatttgtcttattcttctgttgtcgcttttgaagggaggaaatggttaaga |
45929607 |
T |
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| Q |
262 |
acgttcagattgcaact |
278 |
Q |
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| T |
45929608 |
atgttcagattgcaact |
45929624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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