View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_217 (Length: 289)
Name: NF0154_2D_low_217
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_217 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 49546322 - 49546589
Alignment:
| Q |
18 |
aaaataacttgaccaaggacaaaagatgcggcggggtcatgccaccctctctgacctaatacatcccttttagattttttgtttattttcattgaacaaa |
117 |
Q |
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| T |
49546322 |
aaaataacttgaccaaggacaaaagatgcggcggggtcatgccaccctctctgacctaatatatcccttttagattttttgtttattttcattgaacaaa |
49546421 |
T |
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| Q |
118 |
ttttatacaattaataatcaaacctgtatactatgaagaaggaaaacacttgtgagttgagaacaaatggacaaagttaacacgactggtaaaacagcaa |
217 |
Q |
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| T |
49546422 |
ttttatacaattaataatcaaacctgtatactatgaagaaggaaaacacttgtgagttgagaacaaatggacaaagttaacacgactggtaaaacagcaa |
49546521 |
T |
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| Q |
218 |
gaagcttcaatgggcagtattggtggatcataggaccacaactcatgtttattctagaataatatagc |
285 |
Q |
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| T |
49546522 |
gaagcttcaatgggcagtattggtggatgataggaccacaactcatgtttattctagaaagatatagc |
49546589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 74 - 276
Target Start/End: Complemental strand, 47872877 - 47872680
Alignment:
| Q |
74 |
taatacatcccttttagattttttgtttattttcattgaacaaattttatacaattaataatcaaacctgtatactatgaagaaggaaaacacttgtgag |
173 |
Q |
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| T |
47872877 |
taatacactccttttagattttttgtttattttcattgaa-atatttcatgcaattaataatcaaacatgtatactatgaagaaggaa----cgtgtgag |
47872783 |
T |
|
| Q |
174 |
ttgagaacaaatggacaaagttaacac-gactggtaaaacagcaagaagcttcaatgggcagtattggtggatcataggaccacaactcatgtttattct |
272 |
Q |
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| T |
47872782 |
atgagaacaa-tagacaaagttaacattgacttgtaaaacaacaaggagcttcaaagggccatattggtggatgataggaccacaactcatgtttattct |
47872684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 276
Target Start/End: Original strand, 49443524 - 49443653
Alignment:
| Q |
148 |
ctatgaagaaggaaaacacttgtgagttgagaacaaatggacaaagttaacacgactggtaaaacagcaagaagcttcaatgggcagtattggtggatca |
247 |
Q |
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||||||||||||| | ||||||| || ||||||||||||||||||||||| | |||||| ||||| ||||||||||| | ||||| ||||| ||||| | |
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| T |
49443524 |
ctatgaagaaggagatcacttgtaagatgagaacaaatggacaaagttaagatgactgg-caaacaacaagaagcttcgaagggcaatattgatggatga |
49443622 |
T |
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| Q |
248 |
taggac--cacaactcatgtttattctagaa |
276 |
Q |
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| T |
49443623 |
taggactatacaactcatgtttattctagaa |
49443653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 47988495 - 47988536
Alignment:
| Q |
235 |
tattggtggatcataggaccacaactcatgtttattctagaa |
276 |
Q |
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| T |
47988495 |
tattggtggatgataggatcacaactcatgtttatcctagaa |
47988536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 49443379 - 49443436
Alignment:
| Q |
74 |
taatacatcccttttagattttttgtttattttcattgaacaaattttatacaattaa |
131 |
Q |
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| T |
49443379 |
taatacattcctttcagattttttgtttattttctttggaaaaatttcatgcaattaa |
49443436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 47988293 - 47988329
Alignment:
| Q |
84 |
cttttagattttttgtttattttcattgaacaaattt |
120 |
Q |
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| T |
47988293 |
cttttagattttttgtttattttctttgaaaaaattt |
47988329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 276
Target Start/End: Complemental strand, 14962229 - 14962087
Alignment:
| Q |
134 |
atcaaacctgtatactatgaagaaggaaaacacttgtgagttgagaacaaatggacaaagttaacacgactggtaaaacagcaagaagcttcaatgggca |
233 |
Q |
| |
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||||||| ||| |||| ||||||||||||||||| |||| |||||| ||||||||||||||||| || |||||||||| ||||||||||||| ||||| |
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| T |
14962229 |
atcaaacttgtgtactgtgaagaaggaaaacactaatgagatgagaaataatggacaaagttaacatgagtggtaaaacaacaagaagcttcaaagggca |
14962130 |
T |
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| Q |
234 |
gtattggtggatcataggaccacaactcatgtttattctagaa |
276 |
Q |
| |
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| T |
14962129 |
atattggtggatgataggaccacaggtcaagtttattccagaa |
14962087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 43157465 - 43157594
Alignment:
| Q |
144 |
tatactatgaagaaggaaaacacttgtgagttgagaacaaatggacaaagttaacacgactggtaaaacagcaagaagcttcaatgggcagtattggtgg |
243 |
Q |
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||||||| ||||||| ||||||||| | || ||||||||||| ||||||||||||| ||| ||| || ||||||||||||| ||||| ||||||||| |
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| T |
43157465 |
tatactacgaagaagaaaaacacttataagatgagaacaaattgacaaagttaacatgacatgtatttcaacaagaagcttcaaagggcaatattggtgg |
43157564 |
T |
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| Q |
244 |
atcataggaccacaactcatgtttattcta |
273 |
Q |
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| T |
43157565 |
ttgataggaacacacctcatgtttattcta |
43157594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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