View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0154_2D_low_219 (Length: 286)
Name: NF0154_2D_low_219
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0154_2D_low_219
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 51403592 - 51403329
Alignment:
Q
1
ccaaagtgaaatcaggggcgacgtgtcatcgccagataatgatatggctagagcgagaagtacccaggctgcaacatcattaacagcagctgctgacatt
100
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
T
51403592
ccaaagtgaaatcaggggcgacgtgtcatcgccagataatgatatggctagagcaagaagtacccaggctgcaacatcattaacagcagctgctgacatt
51403493
T
Q
101
gctatacgaccaacatccgtggttagcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaa
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
51403492
gctatacgaccaacatccgtggttagcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaa
51403393
T
Q
201
ggaaagggacaggttgtgcacctttggagattgtggctctaagaacaatggatgttcctatgcc
264
Q
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
51403392
ggaaagggacaggttgtgcacctttggagattgtggctctaagaacaacggatgttcctatgcc
51403329
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 29983284 - 29983438
Alignment:
Q
50
agagcgagaagtacccaggctgcaacatcattaacagcagctgctgacattgctatacgaccaacatccgtggttagcagtttgagctcagctaggattc
149
Q
||||| ||||||| ||| || || || ||||| |||||||| ||||||||||| || ||||||||||| || || || |||||||| |||||||||||||
T
29983284
agagcaagaagtatccaagcagcgacgtcattgacagcagcagctgacattgccatccgaccaacatcggttgtgaggagtttgagttcagctaggattc
29983383
T
Q
150
gagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaaggaa
204
Q
|||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||
T
29983384
gagcaaggacaggaaaggctgtgatcgagagagcaacgcccatgaaaacaaggaa
29983438
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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