View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_223 (Length: 280)
Name: NF0154_2D_low_223
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_223 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 81 - 280
Target Start/End: Complemental strand, 38751469 - 38751270
Alignment:
| Q |
81 |
acatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccatttgaacaaagaagcaacaatagtgctactatttt |
180 |
Q |
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| T |
38751469 |
acatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccctttgaacaaagaagcaacaatagtgctactatttt |
38751370 |
T |
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| Q |
181 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaacagctcttctgtgaagctctttggtgttcctctttgtggaaaa |
280 |
Q |
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| T |
38751369 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaatagctcttctgtgaagctctttggtgttcctctttgtggaaaa |
38751270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 38751068 - 38751137
Alignment:
| Q |
18 |
atcaagtaatggaaaatctgaaagaaataactaagtcaaaatctaaatatcagcctcagctatacatgaa |
87 |
Q |
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| T |
38751068 |
atcaagtaatggaaaatctgaaagaaataactaagtcaaaatctaaatatcagcctcagctatacatgaa |
38751137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 81 - 280
Target Start/End: Original strand, 3020980 - 3021179
Alignment:
| Q |
81 |
acatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccatttgaacaaagaagcaacaatagtgctactatttt |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |
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| T |
3020980 |
acatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccctttgaataaagaagcaacaatagtgcttctatttt |
3021079 |
T |
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| Q |
181 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaacagctcttctgtgaagctctttggtgttcctctttgtggaaaa |
280 |
Q |
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| T |
3021080 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaatagctcttctgttaagctttttggtgttcctctttgtggaaaa |
3021179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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