View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_224 (Length: 280)

Name: NF0154_2D_low_224
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_224
NF0154_2D_low_224
[»] chr7 (4 HSPs)
chr7 (19-133)||(12543375-12543503)
chr7 (66-133)||(7744501-7744568)
chr7 (210-265)||(7744645-7744700)
chr7 (206-257)||(12543251-12543302)
[»] chr5 (2 HSPs)
chr5 (61-128)||(11893721-11893788)
chr5 (67-128)||(28086278-28086339)
[»] chr8 (2 HSPs)
chr8 (79-133)||(1080879-1080933)
chr8 (75-133)||(24917449-24917507)
[»] chr2 (1 HSPs)
chr2 (68-128)||(562172-562232)
[»] chr3 (1 HSPs)
chr3 (79-133)||(53281561-53281616)
[»] chr6 (3 HSPs)
chr6 (87-133)||(15339447-15339493)
chr6 (75-128)||(33846143-33846196)
chr6 (75-128)||(33847182-33847235)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 12543503 - 12543375
Alignment:
Q  19 aatactgagaaagaaataataacaaaatggaagaggcaaaggaaaggaaaatgatccatgtac--------------acccccatatacaacccttatgt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||    
T  12543503 aatactgagaaagaaataataacaaaatggaagaggcaaaggaaaggaaaatgatccatgtacaccctttcatgtacacccccatatacaacccttatgt 12543404  T
Q  105 ggcatgggtattttggaaatttcaaacag 133  Q
    |||||||||||||||||||||||||||||    
T  12543403 ggcatgggtattttggaaatttcaaacag 12543375  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 7744501 - 7744568
Alignment:
Q  66 aaaatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 133  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7744501 aaaatgatctatgtacaccccaatatacaccccttatgtggcatgggtattttggaaatttcacacag 7744568  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 7744645 - 7744700
Alignment:
Q  210 caccaccactggctgccgctacattcttgcccttcgccccacccctctctttgatg 265  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7744645 caccaccactggctgccgctgcattcttgcccttcgccccacccctctctttgatg 7744700  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 12543302 - 12543251
Alignment:
Q  206 ccgccaccaccactggctgccgctacattcttgcccttcgccccacccctct 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543302 ccgccaccaccactggctgccgctacattcttgcccttcgccccacccctct 12543251  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 11893721 - 11893788
Alignment:
Q  61 aaaggaaaatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 128  Q
    ||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  11893721 aaagggaaatgattcatgtacaccctcatatacaccccttatgtggcatgggtattttggaaatttca 11893788  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 28086339 - 28086278
Alignment:
Q  67 aaatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 128  Q
    ||||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  28086339 aaatgattcatgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 28086278  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 1080879 - 1080933
Alignment:
Q  79 tacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 133  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1080879 tacacccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 1080933  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 24917449 - 24917507
Alignment:
Q  75 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 133  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24917449 catgtacatccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 24917507  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 562172 - 562232
Alignment:
Q  68 aatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 128  Q
    |||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  562172 aatgattcatgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 562232  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 53281616 - 53281561
Alignment:
Q  79 tacacccccatatacaaccc-ttatgtggcatgggtattttggaaatttcaaacag 133  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  53281616 tacacccccatatacacccccttatgtggcatgggtattttggaaatttcacacag 53281561  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 15339447 - 15339493
Alignment:
Q  87 catatacaacccttatgtggcatgggtattttggaaatttcaaacag 133  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||    
T  15339447 catatacacccgttatgtggcatgggtattttggaaatttcacacag 15339493  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 33846143 - 33846196
Alignment:
Q  75 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 128  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33846143 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33846196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 33847235 - 33847182
Alignment:
Q  75 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 128  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33847235 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33847182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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