View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_230 (Length: 277)
Name: NF0154_2D_low_230
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_230 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 28657136 - 28656886
Alignment:
| Q |
11 |
tatactgctagataattatttatctctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataa |
110 |
Q |
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| T |
28657136 |
tatattgctagctaattatatatct--aattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataa |
28657039 |
T |
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| Q |
111 |
caaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtggccagttcttca |
210 |
Q |
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| T |
28657038 |
caaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtggctagttcttca |
28656939 |
T |
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| Q |
211 |
tccacagtgagaagacccttatgttgcaagatgtttttgtagtagttgatgtc |
263 |
Q |
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| T |
28656938 |
tccacagttagaagacccttatgttgcaaaatgttcttgtagtagttgttgtc |
28656886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 28636645 - 28636392
Alignment:
| Q |
10 |
atatactgctagataattatttatctctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgata |
109 |
Q |
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| T |
28636645 |
atatattgctagctaattatttatatctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgata |
28636546 |
T |
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| Q |
110 |
acaaaagaacagcccttgagaattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtggccagttcttc |
209 |
Q |
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| T |
28636545 |
acaattgaacagcccttgagaattgttcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtggctaattcttc |
28636446 |
T |
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| Q |
210 |
atccacagtgagaagacccttatgttgcaagatgtttttgtagtagttgatgtc |
263 |
Q |
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| T |
28636445 |
atccacagttagaagacccttatgttgcaagatgtttttgtagtagttgttgtc |
28636392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 28606834 - 28606607
Alignment:
| Q |
36 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaaaagaacagcccttgagaattgg |
135 |
Q |
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| T |
28606834 |
ctaattggcattaacgtaacggcaatcctttctaatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgt |
28606735 |
T |
|
| Q |
136 |
tcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtggccagttcttcatccacagtgagaagacccttatgtt |
235 |
Q |
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| T |
28606734 |
tcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgtt |
28606635 |
T |
|
| Q |
236 |
gcaagatgtttttgtagtagttgatgtc |
263 |
Q |
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| T |
28606634 |
gcaagatgtttttgtagtagttgttgtc |
28606607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 28664189 - 28663962
Alignment:
| Q |
36 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaaaagaacagcccttgagaattgg |
135 |
Q |
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| T |
28664189 |
ctaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctccggtaagaggattattctccgataacaattgaacagcccttgagaattgt |
28664090 |
T |
|
| Q |
136 |
tcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtggccagttcttcatccacagtgagaagacccttatgtt |
235 |
Q |
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| T |
28664089 |
tcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgtt |
28663990 |
T |
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| Q |
236 |
gcaagatgtttttgtagtagttgatgtc |
263 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
28663989 |
gcaagatgtttttgtagtagttgttgtc |
28663962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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