View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_231 (Length: 275)
Name: NF0154_2D_low_231
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_231 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 38751740 - 38751466
Alignment:
| Q |
1 |
gttgttgctgataggtgggagtttgcaaatgattacttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatc |
100 |
Q |
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| T |
38751740 |
gttgttgctgataggtgggagtttgcaaatgattacttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatc |
38751641 |
T |
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| Q |
101 |
aacaacaatactacgaacaatcgccacaaatttttcaaccagatgaaaatatatgctggattgattctccattaccatctcctaaatcaaacaccgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751640 |
aacaacaatactacgaacaatcgccacaaatttttcaaccagatgaaagtatatgctggattgattctccattaccatctcctaaatcaaacaccgatat |
38751541 |
T |
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| Q |
201 |
cttaacagcactttctgaggataatcaaagattaaggagaaagaatttcatgctgttatcagaactcagtcacat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751540 |
cttaacagcactttctgaggataatcaaagattaaggagaaagaatttcatgctgttatcagaactcagtcacat |
38751466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 3020704 - 3020983
Alignment:
| Q |
1 |
gttgttgctgataggtgggagtttgcaaatgattacttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||| |
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| T |
3020704 |
gttgttgctgataggtgggagtttgcaaatgaatacttcaaaaaaggagctaagcatctattatgtgaaatccacagaagaaaaactcctcaacactatc |
3020803 |
T |
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| Q |
101 |
aacaacaatactacgaacaatcgccacaaatttttcaaccagatgaaaatatatgctggattgattctccattaccatctcctaaatcaaacac-----c |
195 |
Q |
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| T |
3020804 |
aacaacaatactatgaacaatcaccacaaatttttcaaccagatgaaagtatctgttggattgattctccattaccatctcctaaatcaaacactgatat |
3020903 |
T |
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| Q |
196 |
gatatcttaacagcactttctgaggataatcaaagattaaggagaaagaatttcatgctgttatcagaactcagtcacat |
275 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3020904 |
gatatcttaacagcactctctgaggataatcaaagactaaggagaaagaatttcatgctgttatcagaactcagtcacat |
3020983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 46926615 - 46926545
Alignment:
| Q |
16 |
tgggagtttgcaaatgattacttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaac |
86 |
Q |
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||||||||||||||||| || ||||||||||||| ||||||||| | ||||| || || || |||||||| |
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| T |
46926615 |
tgggagtttgcaaatgaatatttcaaaaaaggagaaaagcatttgctttgtgagattcatagaagaaaaac |
46926545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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