View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_233 (Length: 273)
Name: NF0154_2D_low_233
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_233 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 26557653 - 26557410
Alignment:
| Q |
16 |
tttatttcaaacatgcattgnnnnnnnctttctttctaatgtccaggtaatcaacctctgataacatcatttaataattttcttttgaaggaatcgtttt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26557653 |
tttatttcaaacatgcattgtttttttctttctttctaatgtccaggtaatcaacctctgataacatcatttaataattttcttttgaaggaatcgtttt |
26557554 |
T |
|
| Q |
116 |
ataaattacttaaaaaagcataaaagtacgcaattatcattccctacatatctctaacaaacttccctcnnnnnnnnnnnnntatctctaacaaactcat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26557553 |
ataaattacttaaaaaagcataaaagtacgcaattatcattccctacatatctctaacaaacttccctcaaaaaataaaaaatatctctaacaaactcat |
26557454 |
T |
|
| Q |
216 |
tgtaccatgcaataatattcacgaacttcttttaacctacactt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26557453 |
tgtaccatgcaataatattcacgaacttcttttaacctacactt |
26557410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1491 times since January 2019
Visitors: 2192