View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_239 (Length: 267)
Name: NF0154_2D_low_239
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_239 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 23031020 - 23031255
Alignment:
| Q |
21 |
attattttcctacccttccacataacctctcatttttggcgtgggccgtttattgggtcatccaaggatgcattctaaccggagtttgggtcattgcaca |
120 |
Q |
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| T |
23031020 |
attactttcctacccttccacataacctctcatttttggcgtggcccgtttattgggccatccaaggatgcattctaaccggagtttgggtcattgcaca |
23031119 |
T |
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| Q |
121 |
cgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttgttcttcattcatgtctcttggttccttatttttcgtggaaa |
220 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||| |
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| T |
23031120 |
tgaatgtggccatcatgcatttagtaattatcaatgggtcgacgatttagttggccttgtccttcattcttgcctcttggtaccttatttttcgtggaaa |
23031219 |
T |
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| Q |
221 |
tatagtcatcgccgccaccactctaacacaggttct |
256 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
23031220 |
tatagtcatcgccgccaccactctaacacaggttct |
23031255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 50593858 - 50593934
Alignment:
| Q |
81 |
tccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
157 |
Q |
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| T |
50593858 |
tccaaggttgcattctcaccggtgtttgggtgatagctcatgaatgtggtcaccatgcatttagtaactaccaatgg |
50593934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 37019912 - 37020088
Alignment:
| Q |
80 |
atccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttg |
179 |
Q |
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| T |
37019912 |
atccaaggttgcatccttaccggtgtttgggtcattgcacatgagtgtggccaccatgcattcagtgactatcaatggcttgatgatacagttggcctta |
37020011 |
T |
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| Q |
180 |
ttcttcattcatgtctcttggttccttatttttcgtggaaatatagtcatcgccgccaccactctaacacaggttct |
256 |
Q |
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|||| || || || | || ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||| |
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| T |
37020012 |
ttctccactctgcccttcttgtgccttacttttcatggaaatacagccatcgccgccaccattccaacaccggttct |
37020088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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