View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_24 (Length: 775)
Name: NF0154_2D_low_24
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_24 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 247 - 759
Target Start/End: Complemental strand, 6286887 - 6286375
Alignment:
| Q |
247 |
ctactccgtaatttgggtggttatttgaagtaaaatttaccatacttcgtataagatcgtccctacacggaacaatattggacattaagcttacatcctt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6286887 |
ctactccgtaatttgggtggttatttgaagtaaaatttaccatacttcgtataagatcgtccctacacggaacaatattggactttaagcttacatcctt |
6286788 |
T |
|
| Q |
347 |
ggaaagtaagaaataattcaactttctctatgtaatgaaccataacattatactacctcataaatctgatgaaagtcctaattgttgagtacaatccata |
446 |
Q |
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| T |
6286787 |
ggaaagtaagaaataattcaactttctctatgtaatgaaccataacattatactacctcataaatctgatgaaagtcctaattgttgagtacaatccata |
6286688 |
T |
|
| Q |
447 |
agtcgtatctaaatacaaaatgtactaactggtgattacattaaatataattcatatctgagtaatagtgcaccgactaacgagtatacaatagacaagg |
546 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6286687 |
agtcgtatctaaatacaaaatgtactaactggcgattacattaaatataattcatatctgagtaatagtgcaccgactaacgagtatacaatagacaagg |
6286588 |
T |
|
| Q |
547 |
tagtacaactgatggcttaatacataacgtatatctatagtcatccaactcttttcatctaagctaggcttccaacattcttccaacatcatagatctct |
646 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6286587 |
tagtacaactgatggcttaatacataacgtatatctatagtcatccaactcttttcatctaagctagccttccaacattcttccaacatcatagatctct |
6286488 |
T |
|
| Q |
647 |
tttaactaaactggtactcagagttcatagtttgaaatcaccaagctaatttaaccaggttaccacatacaaaaggtgatcccaacttccttagacttaa |
746 |
Q |
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| T |
6286487 |
tttaactaaactggtactcagagttcatagtttgaaatcaccaagctaatttaaccaggttaccacatacaaaaggtgatcccaacttccttagacttaa |
6286388 |
T |
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| Q |
747 |
tgcggtagtgatg |
759 |
Q |
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| T |
6286387 |
tgcggtagtgatg |
6286375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 6287114 - 6286953
Alignment:
| Q |
15 |
atatggttcaaatatggtatcagtttagtttttcctacctcccatggcttccatgaatggtaacaatcctttcacacccgttgagtggtgacagtgacac |
114 |
Q |
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| T |
6287114 |
atatggttcaaatatggtatcagtttagtttttcctacctcacatggcttccatgaatggtaacaatcctttcacacccgttgagtggtgacagtgacac |
6287015 |
T |
|
| Q |
115 |
tttctgacaagaataagttgggatccgttgatagctcaattgctcaacctgctctagaacct |
176 |
Q |
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| T |
6287014 |
tttctgacaagaataagttgggatccgttgatagctcaattgctcaacctgctctagaacct |
6286953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 468 - 590
Target Start/End: Complemental strand, 20809078 - 20808956
Alignment:
| Q |
468 |
gtactaactggtgattacattaaatataattcatatctgagtaatagtgcaccgactaacgagtatacaatagacaaggtagtacaactgatggcttaat |
567 |
Q |
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|||||||||| || ||||| ||||||||||| |||||||||||||||||| |||| |||||||| ||| | | ||| |||||||| |||||||| ||| |
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| T |
20809078 |
gtactaactgacgagtacatcaaatataattcccatctgagtaatagtgcactgactgacgagtatgcaacacataagatagtacaattgatggctcaat |
20808979 |
T |
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| Q |
568 |
acataacgtatatctatagtcat |
590 |
Q |
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| T |
20808978 |
atatgacgtatatttatagtcat |
20808956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 38064 - 37958
Alignment:
| Q |
484 |
acattaaatataattcatatctgagtaatagtgcaccgactaacgagtatacaatagacaaggtagtacaactgatggcttaatacataacgtatatcta |
583 |
Q |
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|||| ||||| ||||| ||||||||||||| |||| |||| |||||||| ||||| | ||||||||||||||||||||| |||| ||||||| ||| || |
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| T |
38064 |
acatcaaataaaattctcatctgagtaatagcgcactgactgacgagtatgcaatacataaggtagtacaactgatggctcaatatataacgtgtattta |
37965 |
T |
|
| Q |
584 |
tagtcat |
590 |
Q |
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||||||| |
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| T |
37964 |
tagtcat |
37958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 38254 - 38225
Alignment:
| Q |
295 |
gtataagatcgtccctacacggaacaatat |
324 |
Q |
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| T |
38254 |
gtataagatcgtccctacacggaacaatat |
38225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 465
Target Start/End: Original strand, 7779677 - 7779739
Alignment:
| Q |
403 |
ctcataaatctgatgaaagtcctaattgttgagtacaatccataagtcgtatctaaatacaaa |
465 |
Q |
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|||||| |||||||||||||||||| || |||||||| ||||||||||||| | |||||||| |
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| T |
7779677 |
ctcatacatctgatgaaagtcctaactgacgagtacaaaccataagtcgtatatgaatacaaa |
7779739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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