View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_240 (Length: 266)
Name: NF0154_2D_low_240
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_240 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 31338886 - 31338639
Alignment:
| Q |
19 |
aattatgtgtattatgaaatgtaaaatcccagtggttctcctttaccttggactttttgtgtttgttttaaaagctctcgtggatatccgccatattctt |
118 |
Q |
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| T |
31338886 |
aattatgtgtattatgaaatgtaaaatcccagtggttctcctttaccttggactttttgtgtttgttttaaaagctctcgtggatatccgccatattctt |
31338787 |
T |
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| Q |
119 |
gttctctaaatctgcatccacaagttaattgggtgaagttaaatacagatggtgcgtgcaagggtggaaataaagctggttgtggtggtattattgtatt |
218 |
Q |
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| T |
31338786 |
gttctctaaatctgcatccacaagttaattgggtgaagttaaatacagatggtgcgtgcaagggtggaaataaagctggttgtggtggtattattgtatt |
31338687 |
T |
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| Q |
219 |
attagagggaatgatggagaacggattggtggttttgctaaattcatt |
266 |
Q |
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| T |
31338686 |
attagagggaatgatggagaatggattggtggttttgctaaattcatt |
31338639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 31306714 - 31306605
Alignment:
| Q |
20 |
attatgtgtattatgaaatgtaaaatcccagtggttctcctttacctt-ggactttttgtgtttgttttaaaagctctcgtggatatccgccatattctt |
118 |
Q |
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| T |
31306714 |
attatgtgtatcatgaagagtaaaatcccagtggttctcctttaccttcggaattttt---tttcttttcaaaactcttgtggatatccaccatattctt |
31306618 |
T |
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| Q |
119 |
gttctctaaatct |
131 |
Q |
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| T |
31306617 |
gttctctaaatct |
31306605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 42652741 - 42652704
Alignment:
| Q |
161 |
atacagatggtgcgtgcaagggtggaaataaagctggt |
198 |
Q |
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| T |
42652741 |
atacagatggtgcgtgcaagggtggaaatatagctggt |
42652704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 50564654 - 50564770
Alignment:
| Q |
142 |
gttaattgggtgaagttaaatacagatggtgcgtgcaagggtggaaataaagctggttgtggtggtattattgtattattagagggaatgatggagaacg |
241 |
Q |
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| T |
50564654 |
gttaattgggtgaagttaaatagggatggtgcgtgcaagggtggaaatatagctagttgtggtg--------gtattattagagggagtgatggagaatg |
50564745 |
T |
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| Q |
242 |
gattggtggttttgctaaattcatt |
266 |
Q |
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| T |
50564746 |
gattggtggttttactaaattcatt |
50564770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 45089121 - 45089073
Alignment:
| Q |
218 |
tattagagggaatgatggagaacggattggtggttttgctaaattcatt |
266 |
Q |
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| T |
45089121 |
tattagagagaatgatggagaatggattgacggttttgctaaattcatt |
45089073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 21310251 - 21310212
Alignment:
| Q |
227 |
gaatgatggagaacggattggtggttttgctaaattcatt |
266 |
Q |
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| T |
21310251 |
gaatgatggagaatggatcggtggttttgctaaattcatt |
21310212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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