View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_245 (Length: 256)

Name: NF0154_2D_low_245
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_245
NF0154_2D_low_245
[»] chr7 (24 HSPs)
chr7 (1-229)||(26610854-26611082)
chr7 (98-239)||(34899706-34899850)
chr7 (88-239)||(40993019-40993174)
chr7 (96-219)||(47590160-47590283)
chr7 (96-220)||(48316930-48317057)
chr7 (88-239)||(42978445-42978602)
chr7 (101-239)||(26623889-26624027)
chr7 (96-239)||(37837557-37837703)
chr7 (150-231)||(21927840-21927921)
chr7 (95-203)||(25255083-25255192)
chr7 (88-239)||(9450236-9450391)
chr7 (99-239)||(13797031-13797173)
chr7 (88-239)||(30756918-30757073)
chr7 (95-229)||(5078504-5078639)
chr7 (96-229)||(19404866-19404999)
chr7 (162-229)||(39228930-39228997)
chr7 (177-239)||(19296800-19296862)
chr7 (135-209)||(22087199-22087273)
chr7 (141-229)||(28476114-28476202)
chr7 (88-229)||(39171699-39171846)
chr7 (96-222)||(38051183-38051311)
chr7 (99-229)||(41553546-41553677)
chr7 (99-229)||(41553891-41554022)
chr7 (99-229)||(41554236-41554367)
[»] chr1 (26 HSPs)
chr1 (88-239)||(18939160-18939313)
chr1 (88-220)||(32394837-32394972)
chr1 (97-209)||(15492142-15492253)
chr1 (135-238)||(34479380-34479483)
chr1 (80-239)||(15836023-15836185)
chr1 (88-229)||(21947727-21947872)
chr1 (99-193)||(45789415-45789510)
chr1 (162-220)||(8212028-8212086)
chr1 (135-229)||(31317639-31317733)
chr1 (96-220)||(35462155-35462283)
chr1 (137-218)||(26535284-26535366)
chr1 (97-239)||(1742129-1742274)
chr1 (88-239)||(7337762-7337917)
chr1 (95-229)||(44543119-44543253)
chr1 (98-229)||(940214-940346)
chr1 (88-220)||(49626748-49626885)
chr1 (102-220)||(23291760-23291881)
chr1 (85-229)||(45415394-45415541)
chr1 (96-229)||(9341572-9341707)
chr1 (97-239)||(31984028-31984171)
chr1 (115-220)||(13144930-13145036)
chr1 (107-220)||(27580246-27580361)
chr1 (141-239)||(39888087-39888185)
chr1 (141-229)||(16161726-16161814)
chr1 (88-208)||(29738766-29738890)
chr1 (141-209)||(37720251-37720318)
[»] chr4 (27 HSPs)
chr4 (97-248)||(12199783-12199934)
chr4 (99-239)||(10258995-10259136)
chr4 (96-239)||(22611048-22611193)
chr4 (88-229)||(21686350-21686494)
chr4 (96-239)||(26633770-26633915)
chr4 (88-224)||(53810883-53811023)
chr4 (149-229)||(47158147-47158227)
chr4 (88-239)||(13633969-13634125)
chr4 (88-239)||(19853611-19853765)
chr4 (98-220)||(45418392-45418517)
chr4 (93-219)||(54021722-54021850)
chr4 (88-239)||(4142854-4143008)
chr4 (88-229)||(2520632-2520777)
chr4 (86-193)||(36194566-36194676)
chr4 (98-243)||(52061018-52061160)
chr4 (162-239)||(5119272-5119349)
chr4 (163-239)||(17949423-17949499)
chr4 (163-239)||(17953275-17953351)
chr4 (89-190)||(22300701-22300805)
chr4 (96-229)||(9178221-9178353)
chr4 (135-228)||(37030168-37030260)
chr4 (88-209)||(24099199-24099325)
chr4 (96-239)||(33920916-33921061)
chr4 (88-229)||(36161569-36161709)
chr4 (141-239)||(40066154-40066252)
chr4 (96-229)||(32766378-32766514)
chr4 (95-239)||(43510062-43510207)
[»] chr3 (33 HSPs)
chr3 (88-239)||(21431460-21431614)
chr3 (96-220)||(35865050-35865178)
chr3 (96-238)||(6954796-6954941)
chr3 (96-239)||(43488689-43488834)
chr3 (88-239)||(48650833-48650989)
chr3 (96-217)||(20465091-20465212)
chr3 (88-239)||(40556546-40556701)
chr3 (86-229)||(42460579-42460725)
chr3 (88-145)||(629101-629160)
chr3 (97-238)||(9797629-9797774)
chr3 (141-239)||(29921944-29922043)
chr3 (141-239)||(29971097-29971196)
chr3 (88-239)||(47895986-47896141)
chr3 (88-239)||(54148823-54148980)
chr3 (88-239)||(9998301-9998456)
chr3 (88-239)||(40487160-40487314)
chr3 (88-209)||(52116140-52116262)
chr3 (97-239)||(53508067-53508211)
chr3 (101-233)||(52923222-52923355)
chr3 (99-239)||(7449001-7449144)
chr3 (99-239)||(7457143-7457286)
chr3 (88-238)||(12149884-12150036)
chr3 (88-239)||(10108073-10108225)
chr3 (96-239)||(10232914-10233059)
chr3 (98-229)||(50194392-50194526)
chr3 (147-238)||(1649317-1649405)
chr3 (91-220)||(23800028-23800159)
chr3 (98-239)||(36461530-36461674)
chr3 (161-229)||(44960061-44960129)
chr3 (170-248)||(18010939-18011018)
chr3 (112-217)||(31271928-31272034)
chr3 (96-148)||(25631679-25631732)
chr3 (163-219)||(9319970-9320026)
[»] scaffold0603 (1 HSPs)
scaffold0603 (88-239)||(7552-7706)
[»] chr8 (11 HSPs)
chr8 (88-220)||(5046588-5046722)
chr8 (98-239)||(7883338-7883481)
chr8 (103-239)||(40619170-40619307)
chr8 (96-224)||(27110577-27110707)
chr8 (99-229)||(3673295-3673423)
chr8 (98-220)||(14545019-14545144)
chr8 (96-143)||(14916332-14916379)
chr8 (96-229)||(17693721-17693856)
chr8 (88-182)||(24099417-24099512)
chr8 (96-145)||(1236886-1236936)
chr8 (96-145)||(8981043-8981093)
[»] chr6 (15 HSPs)
chr6 (88-239)||(33053267-33053422)
chr6 (88-232)||(68107-68254)
chr6 (89-229)||(30493371-30493510)
chr6 (99-220)||(30608633-30608754)
chr6 (100-239)||(34018409-34018551)
chr6 (88-229)||(12170331-12170476)
chr6 (91-229)||(127516-127651)
chr6 (88-239)||(3913673-3913827)
chr6 (95-239)||(25092325-25092466)
chr6 (96-229)||(30776511-30776646)
chr6 (99-190)||(28981027-28981118)
chr6 (101-239)||(23128468-23128609)
chr6 (162-217)||(32327338-32327393)
chr6 (162-239)||(606118-606195)
chr6 (96-128)||(7976377-7976409)
[»] chr2 (32 HSPs)
chr2 (97-229)||(18107850-18107980)
chr2 (85-239)||(9169358-9169514)
chr2 (148-229)||(4264381-4264462)
chr2 (96-239)||(43397219-43397364)
chr2 (88-219)||(7448093-7448227)
chr2 (88-220)||(4778598-4778734)
chr2 (97-229)||(38445022-38445156)
chr2 (89-239)||(11985330-11985483)
chr2 (95-239)||(4098956-4099103)
chr2 (142-229)||(28871871-28871959)
chr2 (88-229)||(32448731-32448875)
chr2 (88-229)||(19062462-19062605)
chr2 (141-220)||(29279689-29279768)
chr2 (97-208)||(8809137-8809250)
chr2 (162-239)||(4904245-4904322)
chr2 (141-229)||(4041704-4041792)
chr2 (88-229)||(7646317-7646463)
chr2 (96-184)||(28718104-28718192)
chr2 (162-245)||(12554275-12554358)
chr2 (88-232)||(39310959-39311102)
chr2 (96-185)||(11833338-11833430)
chr2 (163-248)||(29173810-29173895)
chr2 (141-222)||(31128897-31128977)
chr2 (95-182)||(37994128-37994216)
chr2 (135-217)||(13014899-13014980)
chr2 (159-248)||(16375869-16375956)
chr2 (88-152)||(37876786-37876852)
chr2 (96-145)||(37416556-37416605)
chr2 (96-229)||(3308793-3308928)
chr2 (199-239)||(8893216-8893256)
chr2 (96-190)||(12648073-12648169)
chr2 (88-193)||(14955368-14955476)
[»] scaffold0127 (1 HSPs)
scaffold0127 (96-229)||(15336-15471)
[»] scaffold0026 (1 HSPs)
scaffold0026 (88-239)||(71963-72118)
[»] chr5 (18 HSPs)
chr5 (88-220)||(6216729-6216869)
chr5 (88-239)||(13007063-13007218)
chr5 (112-239)||(15571347-15571475)
chr5 (88-239)||(38597632-38597786)
chr5 (94-219)||(11074019-11074146)
chr5 (88-229)||(9113834-9113979)
chr5 (88-193)||(14211068-14211173)
chr5 (88-218)||(41630341-41630470)
chr5 (99-220)||(34945268-34945391)
chr5 (88-193)||(38007192-38007299)
chr5 (88-233)||(26878186-26878332)
chr5 (96-217)||(6012259-6012383)
chr5 (141-238)||(11977035-11977134)
chr5 (88-229)||(2979422-2979566)
chr5 (96-185)||(7036071-7036163)
chr5 (97-148)||(11767683-11767735)
chr5 (96-128)||(11867524-11867556)
chr5 (85-128)||(35850616-35850660)
[»] scaffold0262 (1 HSPs)
scaffold0262 (102-226)||(1931-2056)
[»] scaffold0088 (1 HSPs)
scaffold0088 (96-239)||(50630-50776)
[»] scaffold0492 (1 HSPs)
scaffold0492 (80-231)||(12743-12897)
[»] scaffold0009 (1 HSPs)
scaffold0009 (96-239)||(58178-58324)
[»] scaffold0136 (2 HSPs)
scaffold0136 (141-239)||(37938-38035)
scaffold0136 (162-238)||(10142-10217)
[»] scaffold0049 (1 HSPs)
scaffold0049 (96-185)||(71438-71527)
[»] scaffold0017 (1 HSPs)
scaffold0017 (85-229)||(32856-33005)
[»] scaffold0634 (1 HSPs)
scaffold0634 (88-238)||(8349-8501)
[»] scaffold0445 (1 HSPs)
scaffold0445 (88-239)||(1179-1334)
[»] scaffold0039 (1 HSPs)
scaffold0039 (96-193)||(92944-93043)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26611082 - 26610854
Alignment:
Q  1 ttatttgaattatgagttctatttatagggtttggttgacattcataattgaaaatatattaaataagttttctgtcgttttgatttatcgaggagggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||    
T  26611082 ttatttgaattatgagttctatttatagggtttggttgacattcataattgaaaatatattaaataagttttctgtctttttcattcatcgatgagggtg 26610983  T
Q  101 gttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccatttt 200  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  26610982 gttttaggttatttttgacctaaaatcacccttatgcatctttttcccctttctttgaatttaaataagtggtttccacatatatcaagttttccatttt 26610883  T
Q  201 gtgttttttgtgatttcgtcatctgagtg 229  Q
    |||||||||||||||||||| ||||||||    
T  26610882 gtgttttttgtgatttcgtcgtctgagtg 26610854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 34899850 - 34899706
Alignment:
Q  98 gtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||||||||||| |||||| ||||| || | | ||||||||| |||  ||||||| ||  ||||||| |||||| ||||| ||| |||||||     
T  34899850 gtggttttaggtcattttttgacctagaatcacccctctacatctttttttcccttttctttcaatctaaataagtggttttcacatctatcaagttttt 34899751  T
Q  195 cattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  34899750 ccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 34899706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 40993019 - 40993174
Alignment:
Q  88 atcgaggagggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc---tttctttgaaattaaataattggtttccacatat 183  Q
    |||||||| ||| |||||||||||||||| ||||||||||||  | | | ||||||||| |||   ||||||| ||  ||||||| |||||| ||||| |    
T  40993019 atcgaggatggtagttttaggtcattttttgacctaaaatcactcctctacatctttttttccacttttctttcaatctaaataagtggttttcacatct 40993118  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || ||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  40993119 atcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 40993174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 47590160 - 47590283
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    ||||| ||||||||||||||||| ||| ||||| || | | ||| |||||| |  |||||| ||  ||||||| |||||| ||||||||| ||||||| |    
T  47590160 gggtgattttaggtcatttttgaactagaatcacccctctacatttttttccctattctttcaatctaaataagtggttttcacatatatcaagtttttc 47590259  T
Q  196 attttgtgttttttgtgatttcgt 219  Q
     |||||||||||||||||||||||    
T  47590260 cttttgtgttttttgtgatttcgt 47590283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 48317057 - 48316930
Alignment:
Q  96 gggtggttttaggtcatttttg-acctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    |||||||||||||||||||||| ||||| ||||| || | | |||||||||| ||  ||||||| || |||||||| |||||| ||||| ||| || |||    
T  48317057 gggtggttttaggtcatttttggacctagaatcacccctctacatctttttcccccttttctttcaatttaaataagtggttttcacatctatcaaattt 48316958  T
Q  193 tccattttgtgttttttgtgatttcgtc 220  Q
    |   ||||||||||||||||||||||||    
T  48316957 tttcttttgtgttttttgtgatttcgtc 48316930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 42978445 - 42978602
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc---tttctttgaaattaaataattggtttccacata 182  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| |  | | |||||||||||||   ||||  | ||  ||||||| |||||| ||||||    
T  42978445 atcgaggaggggtggttttaggtcattttttgacctagaatcaccactctacatctttttctccccttttcgatcaatctaaataagtggttttcacata 42978544  T
Q  183 tataaagttttccattttgtgtt-ttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||||||||| | ||||||||| ||||||||||||||| ||| |||| ||| |||||    
T  42978545 tataaagtttttccttttgtgttcttttgtgatttcgtcgtctaagtgcggcgttgtg 42978602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 26624027 - 26623889
Alignment:
Q  101 gttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccatttt 200  Q
    |||||| || ||||||||||   ||| | |||| || ||||||||  ||||||||| || |||||||| | |||| |||| |||| ||||||| ||||||    
T  26624027 gttttaagttatttttgaccaggaataacccttctgtatcttttttccctttctttcaatttaaataagttgtttacacacatatcaagtttttcatttt 26623928  T
Q  201 gtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     |||||||||||||||| || |||||||| ||| |||||    
T  26623927 atgttttttgtgatttcatcgtctgagtgcggcgttgtg 26623889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 37837703 - 37837557
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||||||| |||||| ||||| || | | |||||||||  ||||| |||| ||  ||||||| |||||| ||||||||| |||||||    
T  37837703 gggtggttttaggtcattttttgacctagaatcacccctctacatcttttttcccttttctttcaatctaaataagtggtttacacatatattaagtttt 37837604  T
Q  194 ccattttgtgtt-ttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
       ||||||||| |||||||||||| |||||| |||| ||| |||||    
T  37837603 ttcttttgtgtttttttgtgatttcatcatctaagtgcggcgttgtg 37837557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 21927921 - 21927840
Alignment:
Q  150 tttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtg 231  Q
    ||||||| || |||||||| ||||||  |||| ||| ||||||| ||||||||||||||||||||||| || ||||||||||    
T  21927921 tttctttcaatttaaataagtggtttttacatgtattaagtttttcattttgtgttttttgtgatttcatcgtctgagtgtg 21927840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 25255083 - 25255192
Alignment:
Q  95 agggtggttttaggtcatttt-tgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||||||| ||||||| ||||| || | |||||||||||| ||||||||| || |||||||| | |||| |||| |||| |  ||||    
T  25255083 agggtggttttaggtcattttttgacctataatcacccctttgcatctttttcccctttctttcaatttaaataagttgttttcacacatatcacatttt 25255182  T
Q  194 ccattttgtg 203  Q
     |||||||||    
T  25255183 acattttgtg 25255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 9450391 - 9450236
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctt-tttctccttt-ctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | |||||| |||| ||||| |||| ||  ||||||| || ||| ||||| |    
T  9450391 atcgaggagggatggttttaggtcattttttgacctagaatcacccatctacatcttgtttccccttttctttcaatctaaataagtgattttcacatct 9450292  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||  |||||  | |||||||||||||||||||||||| ||| |||||||| |||||    
T  9450291 atctagtttctccttttgtgttttttgtgatttcgtcgtctaagtgtggcgttgtg 9450236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 13797173 - 13797031
Alignment:
Q  99 tggttttaggtcatttttga-cctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatatataaagttttcca 196  Q
    |||||||||||||||||| | |||| ||||| || | | |||||||||| ||||| |||| || |||||||| || |||  |||| ||| ||||||| |     
T  13797173 tggttttaggtcattttttaacctagaatcacccctctacatctttttccccttttctttcaatttaaataagtgattttaacatctatcaagtttttcc 13797074  T
Q  197 ttttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||||||||||| |||||||||| ||| |||| ||| |||||    
T  13797073 ttttgtgttttttatgatttcgtcgtctaagtgcggcgttgtg 13797031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 30757073 - 30756918
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| ||||||||||| |||||| |||||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| || ||| ||||| |    
T  30757073 atcgaggaggggtggttttaggtaattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgattttcacatct 30756974  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || | ||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  30756973 atcatgtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 30756918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 5078639 - 5078504
Alignment:
Q  95 agggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    |||||| ||||||||||||||| |||||| ||||| || | ||||||||| ||||| || |||  |  ||||||| || |||  |||||||| |||||||    
T  5078639 agggtgattttaggtcattttttgacctagaatcacccctctgcatctttctctccattatttcgatctaaataagtgatttttacatatatcaagtttt 5078540  T
Q  194 ccattttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
     | ||||||||||||| || |||||||||||| ||||    
T  5078539 tc-ttttgtgttttttcgtaatttcgtcatctaagtg 5078504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 19404999 - 19404866
Alignment:
Q  96 gggtggttttaggtcat-ttttgacctaaaatcatccttatgcatctttttctcc-tttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||| |||||||||| ||||| || | | ||||||||| ||| ||||||| ||  ||||||| |||||| |||||| || |||||||    
T  19404999 gggtggttttaggtcattttttgacctagaatcacccctctacatctttttttccttttctttcaatctaaataagtggttttcacataaatcaagtttt 19404900  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
     | |||  || |||| ||||||||||| ||| ||||    
T  19404899 tccttt--tgattttagtgatttcgtcgtctaagtg 19404866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 39228930 - 39228997
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    ||||||| |||||| |||| |||| |||  || |||||||||||||||||||||||||  ||||||||    
T  39228930 taaataagtggttttcacacatatcaagactttcattttgtgttttttgtgatttcgttgtctgagtg 39228997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 19296800 - 19296862
Alignment:
Q  177 cacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||| ||| ||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  19296800 cacatctatcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 19296862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 22087199 - 22087273
Alignment:
Q  135 tgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgtttttt 209  Q
    |||||||||||| ||||||||| || |||||||| |||| | |||| |||| || || | |||||||||||||||    
T  22087199 tgcatctttttcccctttctttcaatttaaataagtggtgttcacacatatcaaattctacattttgtgtttttt 22087273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 28476114 - 28476202
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
    |||||||||||||||| ||  ||||||| || ||| |||||| || ||||||| | ||||||||||||| ||||||||||| ||| ||||    
T  28476114 tttttctcctttctttcaatctaaataagtgattttcacatacatcaagtttttc-ttttgtgttttttcgtgatttcgtcgtcttagtg 28476202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 39171846 - 39171699
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc---tttctttgaaattaaataattggtttccacata 182  Q
    ||||||||||| ||||| |||||||||||| |||||| ||||| || | | ||||||||| | |   |||||||  |  ||||||| |||||| || ||     
T  39171846 atcgaggaggggtggttgtaggtcattttttgacctagaatcacccctctacatcttttttttcctttttctttcgatctaaataagtggttttcatatc 39171747  T
Q  183 tataaagttttccattttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
    ||| ||||||| | ||||||||||||| ||||||||||||||| ||||    
T  39171746 tatcaagtttttccttttgtgtttttttgtgatttcgtcatctaagtg 39171699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 38051311 - 38051183
Alignment:
Q  96 gggtggttttaggtcat-ttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||||||||| |||| ||||| ||||| || | | |||| ||||| ||||||||| ||  ||||||  ||||||| | |||||| |||||||     
T  38051311 gggtggttttaggtcatattttaacctagaatcacccatctacatcattttcccctttcttttaatctaaatatgtggtttcaatatatatcaagttttt 38051212  T
Q  195 cattttgtgtt-ttttgtgatttcgtcat 222  Q
      ||||||||| |||  ||||||||||||    
T  38051211 ttttttgtgttatttcatgatttcgtcat 38051183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 41553677 - 41553546
Alignment:
Q  99 tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccat 197  Q
    |||||||||||||||||| || ||| ||||| | || ||||| |||| ||| ||||||| ||  |||||||  | ||||||||||||| |||| ||   |    
T  41553677 tggttttaggtcattttttgatctagaatcaccattttgcatatttt-ctcatttctttcaatctaaataagggatttccacatatatcaagtgttttct 41553579  T
Q  198 tttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
    |||||||||||| |||||||||||  |||||||    
T  41553578 tttgtgttttttcgtgatttcgtcgcctgagtg 41553546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 41554022 - 41553891
Alignment:
Q  99 tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccat 197  Q
    |||||||||||||||||| || ||| ||||| | || ||||| |||| ||| ||||||| ||  |||||||  | ||||||||||||| |||| ||   |    
T  41554022 tggttttaggtcattttttgatctagaatcaccattttgcatatttt-ctcatttctttcaatctaaataagggatttccacatatatcaagtgttttct 41553924  T
Q  198 tttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
    |||||||||||| |||||||||||  |||||||    
T  41553923 tttgtgttttttcgtgatttcgtcgcctgagtg 41553891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 41554367 - 41554236
Alignment:
Q  99 tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccat 197  Q
    |||||||||||||||||| || ||| ||||| | || ||||| |||| ||| ||||||| ||  |||||||  | ||||||||||||| |||| ||   |    
T  41554367 tggttttaggtcattttttgatctagaatcaccattttgcatatttt-ctcatttctttcaatctaaataagggatttccacatatatcaagtgttttct 41554269  T
Q  198 tttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
    |||||||||||| |||||||||||  |||||||    
T  41554268 tttgtgttttttcgtgatttcgtcgcctgagtg 41554236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 18939160 - 18939313
Alignment:
Q  88 atcgaggag-ggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||| |||||||||||||||||||| || ||| ||||| |  | |||||||||||| ||||||||| || |||||||| | |||| |||| ||||    
T  18939160 atcgaggagaggtggttttaggtcattttttgatctagaatcacctctctgcatctttttcccctttctttcaatttaaataagtagttttcacacatat 18939259  T
Q  186 aaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     ||||||| |||||||||||||||||||||||||| |||||||| ||| |||||    
T  18939260 caagtttttcattttgtgttttttgtgatttcgtcgtctgagtgaggcgttgtg 18939313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 32394837 - 32394972
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| |||||||||||||||||| ||| || |||||||| | |||||||||||| ||||| |||| ||  ||||| | |||||| ||||| ||    
T  32394837 atcgaggaggggtggttttaggtcattttttgacttagaatcatccctctgcatctttttccccttttctttcaatctaaatgagtggttttcacatcta 32394936  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtc 220  Q
    | ||||||| | ||||||||||||||||||||||||    
T  32394937 tcaagtttttccttttgtgttttttgtgatttcgtc 32394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 15492142 - 15492253
Alignment:
Q  97 ggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttcca 196  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||| | ||||||| ||  ||||||| || ||| ||||||||| |||||||       
T  15492142 ggtggttttaggtcttttttgacctaaaatcatcattttgcatctttttc-catttctttcaatctaaataaatgattttcacatatatcaagttttttc 15492240  T
Q  197 ttttgtgtttttt 209  Q
    |||||||||||||    
T  15492241 ttttgtgtttttt 15492253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 34479380 - 34479483
Alignment:
Q  135 tgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggca 234  Q
    |||||||||||  ||||||||| || |||||||| |||||| |||| |||| |||||||  |||||||||||||||||||||| || ||||||| ||||     
T  34479380 tgcatcttttttccctttcttttaatttaaataagtggttttcacacatatcaagttttttattttgtgttttttgtgatttcctcgtctgagtatggcg 34479479  T
Q  235 ttgt 238  Q
    ||||    
T  34479480 ttgt 34479483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 15836023 - 15836185
Alignment:
Q  80 tttgatttatcgaggag-ggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttc 176  Q
    ||||||| ||| ||||| |||||||||||||||||||| |||||| ||||| |  ||| ||| |||||||||||| || | || |||||||| ||||||     
T  15836023 tttgattcatcaaggagaggtggttttaggtcattttttgacctagaatcaccgctatacatatttttctccttttctatcaatttaaataagtggtttt 15836122  T
Q  177 cacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||| || |||| || | |||||||||||| ||||||| ||| ||| |||||| |||||||    
T  15836123 cacatacatcaagtgtttcgttttgtgtttttcgtgattttgtcgtctaagtgtgacattgtg 15836185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 21947872 - 21947727
Alignment:
Q  88 atcgagga-gggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc---tttctttgaaattaaataattggtttccacatat 183  Q
    |||||||| |||||||||||||| |||||| ||||| |||||||| | | ||| ||||| |||   ||||||| ||  ||||||| |||||| ||||| |    
T  21947872 atcgaggatgggtggttttaggttatttttaacctagaatcatccatctacatatttttttccccttttctttcaatctaaataagtggttttcacatct 21947773  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    || |||||||   |||||||||||||||||||||||| ||| ||||    
T  21947772 atcaagttttttcttttgtgttttttgtgatttcgtcgtctaagtg 21947727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 45789415 - 45789510
Alignment:
Q  99 tggttttaggtcatttt-tgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||| ||||||| ||||| || | |||||||||||| ||||||||| || |||||||| |||||| ||||| ||| |||||||    
T  45789415 tggttttaggtcattttttgacctagaatcacccctctgcatctttttcccctttctttcaatttaaataagtggttttcacatgtattaagtttt 45789510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 8212086 - 8212028
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtc 220  Q
    ||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||    
T  8212086 taaataagtggttttcacatatatcaagttttcccttttgtgttttttgtgatttcgtc 8212028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 31317639 - 31317733
Alignment:
Q  135 tgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    ||||||||||||  | |||||| || |||||||| |||||| |||| |||| ||||||| ||||||||||||||||| |||||||| | ||||||    
T  31317639 tgcatctttttcctcattctttcaatttaaataagtggttttcacacatatcaagtttttcattttgtgttttttgtaatttcgtcgtgtgagtg 31317733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 35462283 - 35462155
Alignment:
Q  96 gggtggttttaggtcatttttg--acctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagtt 191  Q
    |||||||||||||||||||||   || || |||||||| | | |||||||||  ||  ||||||| || |||||||| |||||| ||||| ||| |||||    
T  35462283 gggtggttttaggtcattttttttacatagaatcatccctctacatcttttttccccttttctttcaatttaaataagtggttttcacatctatcaagtt 35462184  T
Q  192 ttccattttgtgttttttgtgatttcgtc 220  Q
    || | ||||||||||||||||||||||||    
T  35462183 tttccttttgtgttttttgtgatttcgtc 35462155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 26535284 - 26535366
Alignment:
Q  137 catctttttctccttt-ctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcg 218  Q
    |||||||||||||||| |||| ||  ||||||| |||||| ||||||||| ||||||| | ||||||||| ||||||||||||    
T  26535284 catctttttctccttttctttcaatctaaataagtggttttcacatatattaagtttttccttttgtgttatttgtgatttcg 26535366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 1742129 - 1742274
Alignment:
Q  97 ggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctcc-tttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||||||| ||||||||||| ||||| || | | |||||||| | || ||||||| ||  ||||||| |||||| ||||||||| |||||||     
T  1742129 ggtggttttaggtcattttttgacctagaatcacccctctccatcttttcccccttttctttcaatctaaataagtggttttcacatatatcaagttttt 1742228  T
Q  195 cattttgt-gttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
      ||||||  ||||||||||||||||| ||| |||| ||| |||||    
T  1742229 tcttttgtatttttttgtgatttcgtcgtctaagtgcggcgttgtg 1742274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 7337917 - 7337762
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| ||||| || ||||||||| || ||| ||||| || | | |||||||||  ||| ||||||| ||  ||||||| |||||| ||||| |    
T  7337917 atcgaggagggatggttctatgtcattttttgatctagaatcacccctctacatcttttttcctcttttctttcaatctaaataagtggttttcacatct 7337818  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || ||||||| | ||||||||||||||||||||| || ||| |||| ||| |||||    
T  7337817 atcaagtttttccttttgtgttttttgtgatttcatcgtctaagtgcggcgttgtg 7337762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 44543119 - 44543253
Alignment:
Q  95 agggtggttttaggtcatt-tttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    |||||| |||||||| ||| ||||||||||||||| |||  |||||||||||  |||||||||  |  ||||||| || ||| |||| |||| |||| ||    
T  44543119 agggtgcttttaggttattctttgacctaaaatcagcctc-tgcatcttttttccctttctttcgatctaaataagtgattttcacaaatatcaagtgtt 44543217  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
       |||||||||||||||||||||||| ||| ||||    
T  44543218 ttcttttgtgttttttgtgatttcgtcgtctaagtg 44543253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 940214 - 940346
Alignment:
Q  98 gtggttttaggtcatttttgacctaaaatcatccttatgcatctt-tttctccttt-ctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    ||||||||| ||||||||| ||||| ||||| || | |||||||| |||| ||||| |||| || |||||||| |||||| ||||||||| |||||||      
T  940214 gtggttttaagtcattttttacctagaatcacccatctgcatcttgtttccccttttcttttaatttaaataagtggttttcacatatatcaagtttt-- 940311  T
Q  196 att--ttgtgttttttgtgatttcgtcatctgagtg 229  Q
     ||  ||||||||||||||||| |||| ||| ||||    
T  940312 -ttccttgtgttttttgtgattccgtcgtctaagtg 940346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 49626748 - 49626885
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatt-tttgacctaaaatcatccttatgcatc-tttttctcctttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || | |||||| |||||| |||||||||  |  ||||||| || ||| |||| |||    
T  49626748 atcgaggaggggtggttttaggtcattctttgacctaaaatcacccctctgcatcttttttcccctttctttctatctaaataagtgattttcacaaata 49626847  T
Q  185 taaa--gttttccattttgtgttttttgtgatttcgtc 220  Q
    | ||  ||||||  || ||| |||||||||||||||||    
T  49626848 tcaagcgttttcttttgtgttttttttgtgatttcgtc 49626885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 23291881 - 23291760
Alignment:
Q  102 ttttaggtcattttt-gacctaaaatcatccttatgcatcttttt-ctcctttctttgaaattaaataattggtttccacatatataaagttttccattt 199  Q
    ||||||||||||||| |||||| ||||| || |   ||||||||| ||| ||||||| ||  ||||||| |||||| ||||||||| |||||||   |||    
T  23291881 ttttaggtcattttttgacctagaatcacccctcgacatcttttttctcttttctttcaatctaaataagtggttttcacatatatcaagttttttcttt 23291782  T
Q  200 tgtgtt-ttttgtgatttcgtc 220  Q
    |||||| |||||||||||||||    
T  23291781 tgtgtttttttgtgatttcgtc 23291760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 45415394 - 45415541
Alignment:
Q  85 tttatcgaggaggg-tggttttaggtca-tttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccaca 180  Q
    |||||||||||||| ||||||||||||| ||||||| ||| ||||| || | | |||||||||  | | ||||||| || |||||||| |||||| ||||    
T  45415394 tttatcgaggaggggtggttttaggtcattttttgatctagaatcacccctctacatcttttttccccttttctttcaatttaaataagtggttttcaca 45415493  T
Q  181 tatataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    | ||| |||||||   || ||| ||||||||||||||||| ||| ||||    
T  45415494 tctatcaagttttttcttgtgt-ttttttgtgatttcgtcgtctaagtg 45415541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 9341572 - 9341707
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    |||||||||||||||| |||||||| || ||||| |  ||||||||||||||  |||||||| ||  |||||||    ||| ||||||||| |||| ||     
T  9341572 gggtggttttaggtcattttttgacttagaatcacctgtatgcatctttttcctctttctttcaatataaataagaaattttcacatatatcaagtgttt 9341671  T
Q  195 cattttgtgttttt-tgtgatttcgtcatctgagtg 229  Q
      ||||||||||||  ||||||||||| ||||||||    
T  9341672 tcttttgtgtttttacgtgatttcgtcgtctgagtg 9341707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 31984028 - 31984171
Alignment:
Q  97 ggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    |||||||||||||||||||| |||||| || || |  | | ||||||||| |||  |||||||  |  ||||||| |||||| ||||||||| |||||||    
T  31984028 ggtggttttaggtcattttttgacctagaagcacctctctacatctttttttcccttttctttcgatctaaataagtggttttcacatatatcaagtttt 31984127  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     | ||  |||||||||||||||||||| ||| |||| ||| |||||    
T  31984128 tcctt--gtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 31984171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 13145036 - 13144930
Alignment:
Q  115 ttgacctaaaatcatccttatgcatcttttt-ctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtga 213  Q
    |||||||| |||||||| | | ||| ||||| | ||||||||| ||  ||||||| |||||| || |||||| || |||| | ||||||||||||| |||    
T  13145036 ttgacctagaatcatccctctacatatttttacccctttctttcaatctaaataagtggttttcatatatatcaactttttccttttgtgttttttttga 13144937  T
Q  214 tttcgtc 220  Q
    |||||||    
T  13144936 tttcgtc 13144930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 27580361 - 27580246
Alignment:
Q  107 ggtcatttttgacctaaaatcatccttatgcatctttttct---cctttctttgaaattaaataattggtttccacatatataaagttttccattttgtg 203  Q
    |||||||||||||||| |||||||| | | ||||||||| |   |||||| || ||  || |||| |||||| ||||||||| ||||||| | ||||||     
T  27580361 ggtcatttttgacctagaatcatccctctacatcttttttttttcctttcattcaatctatataagtggttttcacatatatcaagtttttccttttgta 27580262  T
Q  204 ttttttgtgatttcgtc 220  Q
    ||||| |||||||||||    
T  27580261 ttttt-gtgatttcgtc 27580246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 39888087 - 39888185
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||||||||||||| ||  | ||||| |||||| |||||||||  ||||||   |||| |||||||||| |||||||| ||| |||| ||| |||||    
T  39888087 tttttctcctttctttaaatcttaataagtggttttcacatatatctagttttttcttttatgttttttgttatttcgtcgtctaagtgcggcgttgtg 39888185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 16161726 - 16161814
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
    |||||||||||| ||| ||  ||||||| || |||||||||| || ||||||| | ||||||||||||| ||||||||||| ||| ||||    
T  16161726 tttttctcctttatttcaatctaaataagtgatttccacatacatcaagtttttc-ttttgtgttttttcgtgatttcgtcgtcttagtg 16161814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 29738890 - 29738766
Alignment:
Q  88 atcgaggaggg-tggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctccttt--ctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| ||||||||||||| ||||| ||||| ||||| || | | |||||||||| |||||  |||| ||  ||||||| |||||| ||||| |    
T  29738890 atcgaggaggggtggttttaggtcaattttttacctagaatcacccctctacatctttttcccctttttctttcaatctaaataagtggttttcacatct 29738791  T
Q  184 ataaagttttccattttgtgttttt 208  Q
    || |||||||   ||||||||||||    
T  29738790 atcaagttttttcttttgtgttttt 29738766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 37720318 - 37720251
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgtttttt 209  Q
    |||||||||||||||| ||  ||||||| || |||||||||| || ||||||| | |||||||||||||    
T  37720318 tttttctcctttctttcaatctaaataagtgatttccacatacatcaagtttttc-ttttgtgtttttt 37720251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 248
Target Start/End: Complemental strand, 12199934 - 12199783
Alignment:
Q  97 ggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttcca 196  Q
    |||||| ||| |||||||||||| || ||||| || | |||||||||||| ||||||||| || ||| |||  |||||| |||| |||  |||||||| |    
T  12199934 ggtggtattaagtcatttttgacatagaatcacccatctgcatctttttcccctttctttcaatttacatatgtggttttcacacatagcaagttttcta 12199835  T
Q  197 ttttgtgttttttgtgatttcgtcatctgagtgtggcattgtgatgtccatc 248  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||| ||||    
T  12199834 ttttgtgttttttgtgatttcgtcgtctgagtgtggcgttgtgttgttcatc 12199783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 10259136 - 10258995
Alignment:
Q  99 tggttttaggtcatttttgacctaaaatcatccttatgcatc--tttttctcctttctttgaaattaaataattggtttccacatatataaagttttcca 196  Q
    |||||||||||||||||||||||||||||| || | | ||||  |||||||| |||||||  |  |||| || |||||| ||||||||| |||||||||     
T  10259136 tggttttaggtcatttttgacctaaaatcacccctctacatcgttttttctcttttctttcgatctaaacaaatggttttcacatatatcaagttttccc 10259037  T
Q  197 ttttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||| | |||||||||||||||||||| | ||||||||||||    
T  10259036 ttttgag-tttttgtgatttcgtcatctaattgtggcattgtg 10258995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 22611048 - 22611193
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||||||||||||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| ||| ||||||     
T  22611048 gggtggttttaggtcatttttgacctagaatcacccatctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaagttta 22611147  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  22611148 tccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 22611193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 21686494 - 21686350
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| |||||| ||||| ||||||||||||||||| || | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| ||    
T  21686494 atcgaggaggggtggtttgaggtcttttttgacctaaaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatcta 21686395  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    | ||||||| | |||||||||||||||||||||||| ||| ||||    
T  21686394 tcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtg 21686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 26633915 - 26633770
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttc-tcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||| ||||||||||||| |||||| ||||| || ||| |||||||||| || ||||||| ||  ||||||| |||||| ||||| ||| |||||||    
T  26633915 gggtggtcttaggtcattttttgacctagaatcacccctatacatctttttcctcttttctttcaatctaaataagtggttttcacatctatcaagtttt 26633816  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
       |||||||||||||||||||||||| ||| |||| ||| |||||    
T  26633815 ttcttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 26633770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 53810883 - 53811023
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | |||||||||| ||  ||||||| || |||||||| || ||| ||||| |    
T  53810883 atcgaggaggggtggttttaggtcattttttgacctataatcacccctctacatctttttcccccttttctttcaatttaaataagtgattttcacatct 53810982  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatct 224  Q
    || ||||| | | ||||||||||||||| ||||||||||||    
T  53810983 atcaagttattccttttgtgttttttgtcatttcgtcatct 53811023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 47158147 - 47158227
Alignment:
Q  149 ctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    |||||||| || |||||||| || ||||||||||||| |||||||   |||||||||||||||||||||||||||| ||||    
T  47158147 ctttctttcaatttaaataagtgatttccacatatatcaagttttttcttttgtgttttttgtgatttcgtcatctaagtg 47158227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 13633969 - 13634125
Alignment:
Q  88 atcgaggag-ggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc----tttctttgaaattaaataattggtttccacata 182  Q
    ||||||||| ||||||||||||||||||||||| || ||||| || | | |||||||| | ||    ||||||| ||  ||||||| |||||| |||||     
T  13633969 atcgaggagtggtggttttaggtcatttttgacatagaatcacccctctacatcttttccccccccttttctttcaatctaaataagtggttttcacatc 13634068  T
Q  183 tataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||| |||||||   |||||||||||||||||||||||| ||| |||| ||| |||||    
T  13634069 tatcaagttttttcttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 13634125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 19853765 - 19853611
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| |||||||||||||||||||||||| ||||| || | | |||||||||  | | ||||||  ||  ||||||| |||||| ||||| ||    
T  19853765 atcgaggaggggtggttttaggtcatttttgacctagaatcacccctctacatcttttttccccttttcttccaatctaaataagtggttttcacatcta 19853666  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | |||||||   |||| ||||||||||||||||||| ||| |||| ||| |||||    
T  19853665 tcaagttttttcttttttgttttttgtgatttcgtcgtctaagtgcggcgttgtg 19853611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 45418392 - 45418517
Alignment:
Q  98 gtggttttaggtcattttt-gacctaaaatcatccttatgca--tctttttctcctttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||||||||||| |||||| |||||||| | | ||  |||||| ||| ||||| | ||  |||||||  ||||| ||||||||| |||||||     
T  45418392 gtggttttaggtcattttttgacctagaatcatccctctacacctcttttcctcttttctctcaatataaataagaggttttcacatatatcaagttttt 45418491  T
Q  195 cattttgtgttttttgtgatttcgtc 220  Q
    | ||||||||||||||||||||||||    
T  45418492 ccttttgtgttttttgtgatttcgtc 45418517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 54021722 - 54021850
Alignment:
Q  93 ggagggtggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaag 189  Q
    |||| ||||||||||||||||||| ||| ||||||||||| | | |||||||||  ||| ||||||| ||  ||||||| |||||| |||||||||  ||    
T  54021722 ggagagtggttttaggtcattttttgacataaaatcatccctctacatcttttttcctcttttctttcaatctaaataagtggttttcacatatatccag 54021821  T
Q  190 ttttccattttgtgttttttgtgatttcgt 219  Q
    |||| | ||||||| |||||||||||||||    
T  54021822 tttttccttttgtg-tttttgtgatttcgt 54021850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 4143008 - 4142854
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| || |||| |||| |    
T  4143008 atcgaggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgttttc-acatct 4142910  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || ||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  4142909 atcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 4142854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 2520632 - 2520777
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | |||||||||  ||  |||| || ||  ||||||| |||||| ||||| |    
T  2520632 atcgaggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttcgttcaatctaaataagtggttttcacatct 2520731  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    || |||||||   |||||||||||||||||||||||| ||| ||||    
T  2520732 atcaagttttttcttttgtgttttttgtgatttcgtcgtctaagtg 2520777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 36194566 - 36194676
Alignment:
Q  86 ttatcgagga-gggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttt-tctcctttctttgaaattaaataattggtttccacata 182  Q
    |||||||||| ||||| |||||| ||| |||||||||||||| ||||| | |||||||||| |||||||||||| || |||||||| || ||| ||||||    
T  36194566 ttatcgaggatgggtgattttagatcaatttttgacctaaaaacatccctctgcatcttttttctcctttctttcaatttaaataagtgattttcacata 36194665  T
Q  183 tataaagtttt 193  Q
     || |||||||    
T  36194666 catcaagtttt 36194676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 52061160 - 52061018
Alignment:
Q  98 gtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccat 197  Q
    |||||||||||||  |||||| ||| ||| ||||   ||||||||||||    |||||| || |||||||| |||||| ||||||    ||||||| |||    
T  52061160 gtggttttaggtccgttttgatctagaataatcccc-tgcatctttttccatgttcttttaatttaaataagtggttttcacatagc--aagtttttcat 52061064  T
Q  198 tttgtgttttttgtgatttcgtcatctgagtgtggcattgtgatgt 243  Q
    |||||||||||| ||||||| || ||| ||||||||||||||||||    
T  52061063 tttgtgttttttatgatttcatcgtctaagtgtggcattgtgatgt 52061018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 5119272 - 5119349
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||||| |||||| ||||||||| ||||||| | ||||||||||| |||||||||||| ||| |||| || ||||||    
T  5119272 taaataagtggttttcacatatatcaagtttttccttttgtgttttgtgtgatttcgtcgtctaagtgcggtattgtg 5119349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 17949499 - 17949423
Alignment:
Q  163 aaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||| |||||| |||| |||| ||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  17949499 aaataagtggttttcacacatatcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 17949423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 17953351 - 17953275
Alignment:
Q  163 aaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||| |||||| |||| |||| ||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  17953351 aaataagtggttttcacacatatcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 17953275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 22300701 - 22300805
Alignment:
Q  89 tcgaggagg-gtggttttaggtca-tttttgacctaaaatcatccttatgcat-ctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||||||||| ||||||| || |||||||| || ||| ||| |||||    
T  22300701 tcgaggaggagtggttttaggtcattttttgacctaaaatcacccctttgcatcctttttctcttttctttcaatttaaataagtgattttcacgtatat 22300800  T
Q  186 aaagt 190  Q
     ||||    
T  22300801 caagt 22300805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 9178221 - 9178353
Alignment:
Q  96 gggtggttttaggtcatttt-tgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    ||||||| |||||||||||| ||||||| ||||| |||| | |||||||||||||  ||||||| ||  ||||||| |||||| |||||||   |||| |    
T  9178221 gggtggtcttaggtcattttttgacctagaatcacccttctacatctttttctcccttttctttcaatctaaataaatggttttcacatat---aagtgt 9178317  T
Q  193 tccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    |  |||||||| ||||||||||||| |||||| ||||    
T  9178318 t-tattttgtgctttttgtgatttcatcatctaagtg 9178353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 37030168 - 37030260
Alignment:
Q  135 tgcatctttt-tctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgt-tttttgtgatttcgtcatctgagt 228  Q
    |||||||||| |||||||||||| || |||||||| || ||| |||| |||| |||||||   | |||||| ||||||||||||||||||||||||    
T  37030168 tgcatcttttctctcctttctttcaatttaaataaatgattttcacacatatcaagtttt---tattgtgtctttttgtgatttcgtcatctgagt 37030260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 24099325 - 24099199
Alignment:
Q  88 atcgaggag-ggtggttttaggtcat--ttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacata 182  Q
    ||||||||| ||||||||||||||||  |||||||||| |||||||| | | |||||||||  | | ||||||| ||  ||||||| || ||| |||||     
T  24099325 atcgaggagaggtggttttaggtcatttttttgacctagaatcatccctctacatcttttttccccttttctttcaatctaaataagtgattttcacatc 24099226  T
Q  183 tataaagttttccattttgtgtttttt 209  Q
    ||| ||||| |||||||||| ||||||    
T  24099225 tatcaagttgtccattttgtatttttt 24099199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 33920916 - 33921061
Alignment:
Q  96 gggtggttttaggtcatttttg--acctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagtt 191  Q
    |||||||||||||||||||||   ||| |||| || || | | ||||||||| |||  ||||||| ||  ||||||| || ||| ||||||||| |||||    
T  33920916 gggtggttttaggtcatttttttaacccaaaagcacccatctacatctttttttcccttttctttcaa--taaataagtgattttcacatatatcaagtt 33921013  T
Q  192 ttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||   ||||||| |||||||||||||||| ||| |||| ||| |||||    
T  33921014 ttttcttttgtgctttttgtgatttcgtcgtctaagtgcggcgttgtg 33921061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 36161569 - 36161709
Alignment:
Q  88 atcgaggag-ggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||| ||||||||||||||| ||||||||||| ||||| || | ||||| |||||| | ||||||| ||  ||||||| || |||  ||||||||    
T  36161569 atcgaggagaggtggttttaggtcattttttgacctagaatcacccatctgcat-tttttcccatttctttcaatctaaataagtgatttttacatatat 36161667  T
Q  186 aaagttttccattttgtg-ttttttgtgatttcgtcatctgagtg 229  Q
     || ||||   ||||||| |||||||||||||| || ||||||||    
T  36161668 caattttt---ttttgtgtttttttgtgatttcttcgtctgagtg 36161709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 40066252 - 40066154
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||| ||| ||||||| ||  ||||||| |||||| ||||||| | ||||||| | ||||||||||| ||||||||| || ||| |||| ||| |||||    
T  40066252 ttttcctcttttctttcaatataaataagtggttttcacatattttaagtttttccttttgtgttttatgtgatttcatcgtctaagtgcggcgttgtg 40066154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 32766378 - 32766514
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    |||||||||||||||| ||||||||||| ||||| || | | |||||||||  | | ||||||| ||  ||| ||| || ||| ||||| ||| ||||||    
T  32766378 gggtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaagtaagtgtttttcacatctatcaagttt 32766477  T
Q  193 tccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    | | ||||  |||||||||||||||||| ||| ||||    
T  32766478 ttcctttttggttttttgtgatttcgtcgtctaagtg 32766514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 43510062 - 43510207
Alignment:
Q  95 agggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagtt 191  Q
    ||||||||||||||||| ||||||||||| |||||  | | | ||||||||| |||  ||||||| ||  ||||||| ||| || ||||| ||| |||||    
T  43510062 agggtggttttaggtcattttttgacctagaatcactcctctacatctttttttcccttttctttcaatctaaataagtggctttcacatttatcaagtt 43510161  T
Q  192 ttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || | |||   |||||||||||||||||| ||| |||| ||| |||||    
T  43510162 tttccttt--cgttttttgtgatttcgtcgtctaagtgcggcgttgtg 43510207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 21431460 - 21431614
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| |||||||||||||||||||||||||||||| || | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| ||    
T  21431460 atcgaggaggggtggttttaggtcatttttgacctaaaatcacccctctacatcttttttcccattttctttcaatctaaataagtggttttcacatcta 21431559  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | ||||||| | |||||||||||||||||||||| | ||| |||| |||||||||    
T  21431560 tcaagtttttctttttgtgttttttgtgatttcgccgtctaagtgcggcattgtg 21431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 35865178 - 35865050
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||||||||| |||||||||||||| | |||||||||  ||| ||||||| ||  ||||||| | |||| ||||||||| |||||||    
T  35865178 gggtggttttaggtcatttttgatctaaaatcatccttctacatcttttttcctcttttctttcaatctaaataagtagttttcacatatatcaagtttt 35865079  T
Q  194 ccattttgtgttt---tttgtgatttcgtc 220  Q
     | ||||||||||   ||||||||||||||    
T  35865078 tc-ttttgtgttttaatttgtgatttcgtc 35865050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 6954941 - 6954796
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    ||||| ||||||||||||||| |||||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| ||| || ||||| ||| ||||||    
T  6954941 gggtgattttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgggtttcacatctatcaagttt 6954842  T
Q  193 tccattttgtgttttttgtgatttcgtcatctgagtgtggcattgt 238  Q
    | |||||||||||||||||||||||||| ||| |||| ||| ||||    
T  6954841 ttcattttgtgttttttgtgatttcgtcgtctaagtgcggcgttgt 6954796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 43488834 - 43488689
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctccttt--ctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    |||||| |||||||| ||||||||||| ||||| || | | |||||||||  |||||  |||| ||  ||||||| |||||| ||||| ||| |||||||    
T  43488834 gggtgggtttaggtcttttttgacctagaatcacccctctacatcttttttccctttttctttcaatctaaataagtggttttcacatctatcaagtttt 43488735  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
        ||||||||||||||||||||||| ||| |||||||| |||||    
T  43488734 ttcatttgtgttttttgtgatttcgtcgtctaagtgtggcgttgtg 43488689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 48650989 - 48650833
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc---tttctttgaaattaaataattggtttccacata 182  Q
    ||||||||||| |||||||||||||||||| |||||||||||| || |   ||||||||| |||   ||||||| ||  |  |||| |||||| |||||     
T  48650989 atcgaggaggggtggttttaggtcattttttgacctaaaatcacccctcgacatctttttttccccttttctttcaatctgtataagtggttttcacatc 48650890  T
Q  183 tataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||| ||||||| | |||||||||||||||||||| ||| ||| |||| |||||||||    
T  48650889 tatcaagtttttccttttgtgttttttgtgattttgtcgtctaagtgcggcattgtg 48650833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 20465212 - 20465091
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    ||||||||||| |||||||||||| || ||||| || | | | |||||||| ||||| ||| ||  ||||||| || |||  |||||||| ||||||| |    
T  20465212 gggtggttttatgtcatttttgacatagaatcacccctctccctctttttcccctttttttcaatataaataagtgattttaacatatatcaagtttttc 20465113  T
Q  196 attttgtgttttttgtgatttc 217  Q
     |||||||||||||||||||||    
T  20465112 cttttgtgttttttgtgatttc 20465091  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 40556546 - 40556701
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || |   ||||||||| |||  |||||||  |  ||||||| |||||| || || |    
T  40556546 atcgaggaggggtggttttaggtcattttttgacctagaatcacccctccacatctttttttcccttttcttttgatataaataagtggttttcatatct 40556645  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || ||||||||| ||||||||||| |||||||||||| ||| |||| ||| |||||    
T  40556646 atcaagttttcccttttgtgttttatgtgatttcgtcgtctaagtgcggcgttgtg 40556701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 229
Target Start/End: Original strand, 42460579 - 42460725
Alignment:
Q  86 ttatcgaggaggg-tggttttaggtca-tttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacat 181  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||  | |||||||||||  | | ||||||| ||  ||||||| || |||||||||    
T  42460579 ttatcgaggagggatgattttaggtcagtttttgacctaaaatcatcaatctgcatcttttttccccttttctttcaatctaaataagtgatttccacat 42460678  T
Q  182 atataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    | || ||||||| | ||| |||||||| ||||||||||| ||| ||||    
T  42460679 acatcaagtttttc-tttcgtgtttttcgtgatttcgtcgtcttagtg 42460725  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 629160 - 629101
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatt-tttgacctaaaatcatccttatgcatcttttt 145  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  629160 atcgaggaggggtggttttaggtcattctttgacctaaaatcatccttctgcatcttttt 629101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 9797774 - 9797629
Alignment:
Q  97 ggtggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt---ctcctttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    |||||||||||||||||||| |||||| ||||| || | | |||||||||   ||| ||||||| ||  ||||||| |||||| ||||| ||| ||||||    
T  9797774 ggtggttttaggtcattttttgacctagaatcacccctctacatcttttttttctcttttctttcaatctaaataagtggttttcacatctatcaagttt 9797675  T
Q  193 tccattttgtgttttttgtgatttcgtcatctgagtgtggcattgt 238  Q
        |||||||||||||||||||||||| ||| |||| ||| ||||    
T  9797674 ctacttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgt 9797629  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 29921944 - 29922043
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgtttttt-gtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||| ||||||||| ||  ||||||| || ||||||||||||| |||| ||   ||||||||||||| ||||||||||| |||||||||||| |||||    
T  29921944 tttttcccctttctttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcgtctgagtgtggcgttgtg 29922043  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 29971097 - 29971196
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgtttttt-gtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||| ||||||||| ||  ||||||| || ||||||||||||| |||| ||   ||||||||||||| ||||||||||| |||||||||||| |||||    
T  29971097 tttttcccctttctttcaatctaaataagtgatttccacatatatcaagtgttttcttttgtgttttttcgtgatttcgtcgtctgagtgtggcgttgtg 29971196  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 47895986 - 47896141
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt-ctccttt-ctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| ||||| ||| |||||||| |||||| ||||| || | | ||||||||| ||| ||| |||| ||  ||||||| |||||| |||||||    
T  47895986 atcgaggaggggtggttatagatcattttttgacctagaatcacccctctacatcttttttctctttttctttcaatctaaataagtggttttcacatat 47896085  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || |||||||   |||||||||||||||||||||||| ||  |||||||| |||||    
T  47896086 atcaagttttttcttttgtgttttttgtgatttcgtcgtcaaagtgtggcgttgtg 47896141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 54148823 - 54148980
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | |||||||||  ||| ||||||| ||  ||||||| |||||| ||||| |    
T  54148823 atcgaggaggggtggttttaggtcattttttgacctacaatcacccctctacatcttttttcctcttttctttcaatctaaataagtggttttcacatct 54148922  T
Q  184 ataaagttttccattttgtgtttt--ttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || |||||||   |||||| ||||  ||||||||||||| ||| |||| |||||||||    
T  54148923 atcaagttttttcttttgtattttttttgtgatttcgtcgtctaagtgcggcattgtg 54148980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 9998301 - 9998456
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt--gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacata 182  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||| |     
T  9998301 atcgaggaggggtggttttaggtcatttttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacgtc 9998400  T
Q  183 tataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||| ||||||| ||||||||| |||||||||||||||| ||| |||| ||| |||||    
T  9998401 tatcaagtttttcattttgtg-tttttgtgatttcgtcgtctaagtgcggcgttgtg 9998456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 40487160 - 40487314
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| || ||||||||||||||| |||||| |||||  ||| | |||||||||| ||||| |||| ||  ||||||| |||||| ||| | |     
T  40487160 atcgaggaggggtgattttaggtcattttttgacctagaatcactcttctacatctttttccccttttctttcaatctaaataagtggttttcacttctt 40487259  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | ||||||| | |||||| ||||||||||||||||| ||| |||| ||| |||||    
T  40487260 tcaagtttttctttttgtattttttgtgatttcgtcgtctaagtgcggcgttgtg 40487314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 52116262 - 52116140
Alignment:
Q  88 atcgaggagggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttct-cctttctttgaaattaaataattggtttccacatatata 186  Q
    |||||||| ||||||| |||||| ||||| ||||| |||||| | | ||||||||||| | ||||| ||| || |||||||| || ||| |||||||||     
T  52116262 atcgaggatggtggttgtaggtcttttttaacctagaatcattcatctgcatctttttttccctttgttttaatttaaataagtgattttcacatatatc 52116163  T
Q  187 aagttttccattttgtgtttttt 209  Q
    |||||||   |||||||||||||    
T  52116162 aagttttttcttttgtgtttttt 52116140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 53508067 - 53508211
Alignment:
Q  97 ggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    |||||| ||||||||||||||||||||||||| || | ||| ||||||| |||  ||||||| ||  ||||||| || ||| ||||||||| |||||||     
T  53508067 ggtggtcttaggtcatttttgacctaaaatcacccatctgcgtcttttt-tcctttttctttcaatataaataagtgattttcacatatatcaagttttt 53508165  T
Q  195 cattttgtgtttttt-gtgatttcgtcatctgagtgtggcattgtg 239  Q
      || |||||||||| ||||||||||| ||||| || ||| |||||    
T  53508166 tcttctgtgttttttcgtgatttcgtcgtctgaatgcggcgttgtg 53508211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 233
Target Start/End: Complemental strand, 52923355 - 52923222
Alignment:
Q  101 gttttaggtcatttttgacctaaaatcatccttatgcatc-tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattt 199  Q
    |||||| ||||||||||||||| ||||| || | | |||| |||||| | ||||||| ||  ||||||| |||||| ||||| ||| ||||||| | |||    
T  52923355 gttttaagtcatttttgacctagaatcacccctctacatcttttttcccttttctttcaatctaaataagtggttttcacatctatcaagtttttccttt 52923256  T
Q  200 tgtgttttttgtgatttcgtcatctgagtgtggc 233  Q
    ||||| ||||| ||||| ||| ||| ||||||||    
T  52923255 tgtgtcttttgggattttgtcgtctaagtgtggc 52923222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 7449144 - 7449001
Alignment:
Q  99 tggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    |||||||||||||||||| ||| || |||| ||| | | |||||||||  ||| ||||||| ||  ||||||| |||||| | ||| ||| |||||||||    
T  7449144 tggttttaggtcattttttgacatagaatcgtccctctacatcttttttcctcttttctttcaatctaaataagtggttttcgcatctatcaagttttcc 7449045  T
Q  196 attttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     ||||| |||||||||||||| ||| ||| ||||  ||||||||    
T  7449044 cttttgagttttttgtgattttgtcgtctaagtgctgcattgtg 7449001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 7457286 - 7457143
Alignment:
Q  99 tggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    |||||||||||||||||| ||| || |||| ||| | | |||||||||  ||| ||||||| ||  ||||||| |||||| | ||| ||| |||||||||    
T  7457286 tggttttaggtcattttttgacatagaatcgtccctctacatcttttttcctcttttctttcaatctaaataagtggttttcgcatctatcaagttttcc 7457187  T
Q  196 attttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     ||||| |||||||||||||| ||| ||| ||||  ||||||||    
T  7457186 cttttgagttttttgtgattttgtcgtctaagtgctgcattgtg 7457143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 12150036 - 12149884
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||||| |||||||| || |||||| |||||| ||||| || | | || |||||| || ||||||| ||  ||||||| ||||||  ||||||||    
T  12150036 atcgaggaggggtggttttaagttattttttgacctataatcacccctctacacctttttttcttttcttttaagctaaataagtggtttttacatatat 12149937  T
Q  186 aaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgt 238  Q
      ||||||   ||||||| |||||||||||||||||||| |||| ||| ||||    
T  12149936 ccagtttttgcttttgtgatttttgtgatttcgtcatctaagtgcggcgttgt 12149884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 10108073 - 10108225
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| ||||||||||||| |||||||||| ||||| || | | |||||||||  | | ||||||| ||  ||||||| |||||| ||| | ||    
T  10108073 atcgaggaggggtggttttaggtca-ttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacgtcta 10108171  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | ||||||| | ||||||| |||||||||||||||| ||| |||| ||| |||||    
T  10108172 tcaagtttttccttttgtg-tttttgtgatttcgtcgtctaagtgcggcgttgtg 10108225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 10232914 - 10233059
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    |||||||||||||||| ||||||||||| ||||| || | | |||||||||  | | ||||||| ||  ||||||| |||||| ||| | ||| ||||||    
T  10232914 gggtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacgtctatcaagttt 10233013  T
Q  193 tccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | | ||||||| |||||||||||||||| ||| |||| ||| |||||    
T  10233014 ttccttttgtg-tttttgtgatttcgtcgtctaagtgcggcgttgtg 10233059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 50194526 - 50194392
Alignment:
Q  98 gtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctt-tctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    |||||||||| |||||||| |||||||||||| |  | |||||| ||||  |||| ||||| ||  ||||||| || ||||||||||||| |||| ||      
T  50194526 gtggttttagatcattttttgacctaaaatcacctctctgcatcctttttcccttctctttcaatctaaataagtgatttccacatatatcaagtgtttt 50194427  T
Q  196 attttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
     ||||||||||||| ||||||||||| ||||||||    
T  50194426 cttttgtgttttttcgtgatttcgtcgtctgagtg 50194392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 1649317 - 1649405
Alignment:
Q  147 tcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgt 238  Q
    |||||||||| ||  ||||||| |||||| ||||||||| ||| ||| |   |||| ||||||||||||||||| |||||||||||| ||||    
T  1649317 tcctttctttcaatctaaataagtggttttcacatatatcaagattttc---ttgttttttttgtgatttcgtcgtctgagtgtggcgttgt 1649405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 23800159 - 23800028
Alignment:
Q  91 gaggagggtggttttaggtca-tttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataa 187  Q
    |||| |||||||||||||| | ||||||||||||||| |  ||| | |||||||||  ||| ||||||| ||  ||||||| ||||||  |||||||| |    
T  23800159 gaggggggtggttttaggttattttttgacctaaaattactcttctacatcttttttcctcttttctttcaatctaaataagtggtttttacatatatca 23800060  T
Q  188 agttttccattttgtgttttttgtgatttcgtc 220  Q
    ||||| || |||| || ||||||||||||||||    
T  23800059 agtttgcccttttttg-tttttgtgatttcgtc 23800028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 36461674 - 36461530
Alignment:
Q  98 gtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||||||||||| |||||| | ||| || | | |||||||||  ||  ||||||| ||  ||||||| || ||| ||||| ||| |||||||     
T  36461674 gtggttttaggtcattttttgacctatattcacccctctacatcttttttccccttttctttcaatctaaataagtgattttcacatctatcaagttttt 36461575  T
Q  195 cattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
      |||||||||||||||||||||||| ||| |||| ||| |||||    
T  36461574 tcttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 36461530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 44960129 - 44960061
Alignment:
Q  161 ttaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    |||||||| |||||| ||||| ||| ||||||| | |||| ||||||||||||||||||| ||| ||||    
T  44960129 ttaaataagtggttttcacatctattaagtttttccttttatgttttttgtgatttcgtcgtctaagtg 44960061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 18010939 - 18011018
Alignment:
Q  170 tggtttccacatatat-aaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtgatgtccatc 248  Q
    |||||| ||||||||| |||||||| | ||||||||||||||||||| ||| |||| |||||| | ||||| ||| ||||    
T  18010939 tggttttcacatatatcaaagtttttccttttgtgttttttgtgattccgttatctaagtgtgacgttgtgttgttcatc 18011018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 31272034 - 31271928
Alignment:
Q  112 tttttgacctaaaatcatccttatgcatctttt-tctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttg 210  Q
    ||||| ||||| |||||||| | | |||||||| || ||||||| | ||  ||||||| |||||| ||||| ||| |||||||   ||||||||||||||    
T  31272034 tttttaacctagaatcatccctttacatcttttgtcccctttctatcaatctaaataaatggttttcacatttatcaagttttttcttttgtgttttttg 31271935  T
Q  211 tgatttc 217  Q
    |||||||    
T  31271934 tgatttc 31271928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 25631732 - 25631679
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctc 148  Q
    |||||||||| ||||| |||||||||||||||||||| | | ||||||||||||    
T  25631732 gggtggttttgggtcaatttttgacctaaaatcatccctctccatctttttctc 25631679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 9319970 - 9320026
Alignment:
Q  163 aaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgt 219  Q
    |||||| |||||| ||||| ||| ||||||| | ||||||||||||| |||||||||    
T  9319970 aaataagtggttttcacatctatcaagtttttccttttgtgttttttatgatttcgt 9320026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 7552 - 7706
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttt-tgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||  | | |||||||||| | ||||||||| || |||||||| |||||| |||||||||    
T  7552 atcgaggagggatggttttaggtcattttttgacctagaatcactcatctgcatcttttacccctttctttcaatttaaataagtggttttcacatatat 7651  T
Q  186 aaagttttccattttgtg-ttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     ||||||| | ||||||| |||||||||| || |||||||||||| ||| |||||    
T  7652 caagtttttccttttgtgtttttttgtgaatttgtcatctgagtgcggcgttgtg 7706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 5046588 - 5046722
Alignment:
Q  88 atcgaggagggtggttttaggtcatttttg--acctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    |||||||| ||||||||||||||||||||   ||||| ||||  || |||||||||||||| ||||||||| || |||||||| || ||| |||| ||||    
T  5046588 atcgaggaaggtggttttaggtcattttttttacctagaatcgcccctatgcatctttttcccctttcttttaatttaaataagtgattttcacacatat 5046687  T
Q  186 aaagttttccattttgtgttttttgtgatttcgtc 220  Q
     ||||||| | ||||||||||||| ||||||||||    
T  5046688 caagttttactttttgtgttttttatgatttcgtc 5046722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 7883481 - 7883338
Alignment:
Q  98 gtggttttaggtcatttttgacctaaaatcatccttatgcatcttttt---ctcctttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||||||||||||| ||| ||||| || | | |||||||||   ||| ||||||| ||  ||||||| |||||| ||||| ||| |||||||     
T  7883481 gtggttttaggtcatttttgatctataatcacccctctacatcttttttccctcttttctttcaatctaaataagtggttttcacatctatcaagttttt 7883382  T
Q  195 cattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | |||||||||||||||||||||||||||| |||| ||| |||||    
T  7883381 c-ttttgtgttttttgtgatttcgtcatctaagtgcggcgttgtg 7883338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 40619307 - 40619170
Alignment:
Q  103 tttaggtcatttttgacctaaaatcatccttatgcatcttttt-ctcctttctttgaaattaaataattggtttccacatatataaagttttccattttg 201  Q
    |||||||||||||||||||| |||||||| | | ||| ||||| ||| ||||| | ||  ||||||| || ||| ||||||||| ||||||| | |||||    
T  40619307 tttaggtcatttttgacctagaatcatccctctacatattttttctcttttctatcaatctaaataagtgattttcacatatatcaagtttttctttttg 40619208  T
Q  202 tgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||||||||||||| || ||| |||| ||| |||||    
T  40619207 tgttttttgtgatttcatcgtctaagtgcggcgttgtg 40619170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 27110707 - 27110577
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    ||||||||||||||||||||| || |||||||||  | | | |||||||||  ||| ||||||| ||  ||||||| |||| | ||||||||| ||||||    
T  27110707 gggtggttttaggtcattttttgatctaaaatcacacatctacatcttttttactcttttctttcaatctaaataagtggtcttcacatatatcaagttt 27110608  T
Q  193 tccattttgtgttttttgtgatttcgtcatct 224  Q
    | | |||||||| |||||| ||||||||||||    
T  27110607 ttccttttgtgt-ttttgtaatttcgtcatct 27110577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 3673295 - 3673423
Alignment:
Q  99 tggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc-tttctttgaaattaaataattggtttccacatatataaagttttccat 197  Q
    |||||||||||||||||||||||| |||||||| | | |||||||| | || ||||||| ||  ||||||| |||||  |||||||   |||| || | |    
T  3673295 tggttttaggtcatttttgacctagaatcatccctctacatcttttgccccttttctttcaatctaaataagtggttatcacatat---aagtgtttcct 3673391  T
Q  198 tttgtgttttttgtgatttcgtcatctgagtg 229  Q
    |||||  |||||||||||||||| ||| ||||    
T  3673392 tttgttctttttgtgatttcgtcgtctaagtg 3673423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 14545144 - 14545019
Alignment:
Q  98 gtggttttaggtcat-ttttgacctaaaatcatcct-tatgcatc--tttttctcctttctttgaaattaaataattggtttccacatatat-aaagttt 192  Q
    ||||||||||||||| |||||||||||||||| ||| | | ||||  |||||||| ||||||| ||  ||||||| |||||| ||||||||| ||| |||    
T  14545144 gtggttttaggtcattttttgacctaaaatcaccctctctacatctttttttctcttttctttcaatctaaataagtggttttcacatatatcaaaattt 14545045  T
Q  193 tccattttgtgttttttgtgatttcgtc 220  Q
    ||| ||||||  ||||||||||||||||    
T  14545044 tcc-ttttgt-atttttgtgatttcgtc 14545019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 14916379 - 14916332
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatcttt 143  Q
    ||||||||||||||||||||||||||| ||||| || | |||||||||    
T  14916379 gggtggttttaggtcatttttgacctagaatcacccatctgcatcttt 14916332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 17693856 - 17693721
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatc-tttttctc-ctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    |||| |||||||||||||||||||||| |||||||| | | |||| ||||||||  ||||||| ||  ||||||| || |||  ||| |||| |||||||    
T  17693856 gggttgttttaggtcatttttgacctagaatcatccctctacatcttttttctcaatttctttcaatctaaataaatgttttgaacaaatatcaagtttt 17693757  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
     | |||||  |||| |||||||||||| ||| ||||    
T  17693756 tccttttgcattttatgtgatttcgtcgtctaagtg 17693721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 24099512 - 24099417
Alignment:
Q  88 atcgaggagggtggttttaggtcatttttgacctaaaatcatccttatgcatctt-tttctcctttctttgaaattaaataattggtttccacata 182  Q
    |||||| ||||||| |||||||||||||||||||| ||||| || | ||||| || ||||  ||||||||  | |||||||| || ||||||||||    
T  24099512 atcgagtagggtggctttaggtcatttttgacctagaatcacccctctgcattttgtttcctctttctttcgatttaaataagtgatttccacata 24099417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 1236936 - 1236886
Alignment:
Q  96 gggtggttttaggtcatt-tttgacctaaaatcatccttatgcatcttttt 145  Q
    |||||||||||||||||| ||||||||||||| |||| | |||||||||||    
T  1236936 gggtggttttaggtcattctttgacctaaaataatccctctgcatcttttt 1236886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 8981043 - 8981093
Alignment:
Q  96 gggtggttttaggtcatttt-tgacctaaaatcatccttatgcatcttttt 145  Q
    |||||||||||||||||||| ||||||||||||| || |||||||| ||||    
T  8981043 gggtggttttaggtcattttttgacctaaaatcacccctatgcatcctttt 8981093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 33053422 - 33053267
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||| | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| |    
T  33053422 atcgaggaggggtggttttaggtcattttttgacctagaatcatccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatct 33053323  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || ||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  33053322 atcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 33053267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 68254 - 68107
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttttgacctaaaatcatcct-tatgcatctttttctccttt-ctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| ||||||||||| |||||||||||| ||||| ||  | | |||||||||| ||||| |||| ||  ||||||| |||||| ||||| ||    
T  68254 atcgaggagggatggttttaggtaatttttgacctagaatcaccccctctacatctttttccccttttcttttaatctaaataagtggttttcacatcta 68155  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtgg 232  Q
    | ||||||| | |||||||||||||||||||||||| ||| |||||||    
T  68154 tcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgtgg 68107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 30493371 - 30493510
Alignment:
Q  89 tcgaggagggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataa 187  Q
    |||| |||||||||||| |||||||||| |||||| ||||| ||  ||||||||||||  ||||||||| ||| ||||||| || ||||||||||||| |    
T  30493371 tcgaagagggtggttttcggtcattttttgacctagaatcaccc--atgcatcttttttccctttctttcaaactaaataagtgatttccacatatatca 30493468  T
Q  188 agttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    ||| ||   |||||||||||| |||||||| || ||||||||    
T  30493469 agtgttttcttttgtgtttttcgtgatttcctcgtctgagtg 30493510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 30608754 - 30608633
Alignment:
Q  99 tggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc-tttctttgaaattaaataattggtttccacatatataaagttttccat 197  Q
    |||||||||||||||||||||||| ||||| || | | ||| ||||||||| ||||||| ||  ||||| | |||||| ||||||||| ||||||| |||    
T  30608754 tggttttaggtcatttttgacctagaatcacccctctacatatttttctccttttctttcaatctaaattagtggttttcacatatatcaagtttt-cat 30608656  T
Q  198 tttgtgttttttgtgatttcgtc 220  Q
    ||||| |||||||||||||||||    
T  30608655 tttgtattttttgtgatttcgtc 30608633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 34018409 - 34018551
Alignment:
Q  100 ggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttttcca 196  Q
    ||||||||||||||||| |||||| ||||| || | | ||||| |||  ||  ||||||| || |||||||| |||||| ||||||||| |||||||       
T  34018409 ggttttaggtcattttttgacctagaatcacccctctacatctctttacccattttctttcaatttaaataagtggttttcacatatatcaagttttttc 34018508  T
Q  197 ttttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||||||||||||||||||||| ||| |||||||| |||||    
T  34018509 ttttgtgttttttgtgatttcgtcgtctaagtgtggcgttgtg 34018551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 12170331 - 12170476
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| |    
T  12170331 atcgaggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatct 12170430  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    || ||||||| | |||||||||||||||||||||||| ||| ||||    
T  12170431 atcaagtttttcgttttgtgttttttgtgatttcgtcgtctaagtg 12170476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 127516 - 127651
Alignment:
Q  91 gaggagggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatatataaag 189  Q
    ||||||||||||||||||| |||||||| ||||||||| || | | |||||||||| | ||| ||||     ||||||| |||||| ||||||||| |||    
T  127516 gaggagggtggttttaggt-atttttgatctaaaatcacccctctacatctttttcccattttctttcc---taaataagtggttttcacatatatcaag 127611  T
Q  190 ttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    |||| | |||||||||||||||||||||||| ||| ||||    
T  127612 tttttccttttgtgttttttgtgatttcgtcgtctaagtg 127651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 3913827 - 3913673
Alignment:
Q  88 atcgaggagggtggttttaggtcat-ttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||||||||||||||||| |||||||||| ||||| || |  ||||||||||  ||  | ||||| ||  ||||||| |||||| ||||| ||    
T  3913827 atcgaggagggtggttttaggtcattttttgacctagaatcacccctccgcatcttttttcccattctctttcaatctaaataagtggttttcacatcta 3913728  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | |||||||   ||||||||||||||| |||||||| ||| |||| ||| |||||    
T  3913727 tcaagttttttcttttgtgttttttgttatttcgtcgtctaagtgcggcgttgtg 3913673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 25092325 - 25092466
Alignment:
Q  95 agggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||| | |  |||||| |||||||||| ||  ||||||||| || || | ||||| ||  ||||||| ||||||||||||| ||  ||||||     
T  25092325 agggtggtttttgatattttttggcctaaaatcacccaaatgcatcttctt-tcttctcttttaatctaaataaatggtttccacatagatcgagtttt- 25092422  T
Q  195 cattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     |  ||||||||||||||||||||||||||||||||||| |||||    
T  25092423 -aacttgtgttttttgtgatttcgtcatctgagtgtggcgttgtg 25092466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 30776511 - 30776646
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttt-tctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||| |||||||||| ||||||||||| ||||| || | ||||| |||| |||||||||||| ||  ||||||| |  |||||||||| || |||||||    
T  30776511 gggtgattttaggtcaatttttgacctagaatcacccctctgcatattttttctcctttctttcaatctaaataagtaatttccacatacatcaagtttt 30776610  T
Q  194 ccattttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
     | ||||||||||||| ||||||||||| ||| ||||    
T  30776611 tc-ttttgtgttttttcgtgatttcgtcgtcttagtg 30776646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 28981027 - 28981118
Alignment:
Q  99 tggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagt 190  Q
    |||||||||||||||||||||||| ||| || |||  | ||||||||  ||||||||| ||  ||||||| || ||||||||||||| ||||    
T  28981027 tggttttaggtcatttttgacctagaattattcttccgtatcttttttccctttctttcaatctaaataagtgatttccacatatatcaagt 28981118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 23128468 - 23128609
Alignment:
Q  101 gttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttttccat 197  Q
    |||||||||||||||| |||||| ||||| || | | |||||||||| ||  ||||||| |   ||||||| |||||| ||||| ||| ||||||| | |    
T  23128468 gttttaggtcattttttgacctagaatcacccctctacatctttttccccattttctttcattctaaataagtggttttcacatctatcaagtttttcct 23128567  T
Q  198 tttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||| |||||||||||||| || ||| |||| ||| |||||    
T  23128568 tttgtattttttgtgatttcatcgtctaagtgcggcgttgtg 23128609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 32327393 - 32327338
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttc 217  Q
    ||||||| |||||| ||||| ||| ||||||| | |||||||||||||||||||||    
T  32327393 taaataagtggttttcacatctatcaagtttttccttttgtgttttttgtgatttc 32327338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 606118 - 606195
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||||| |||||| ||||| ||| || |||| | ||||||||| |||||||||||||| ||| |||| ||| |||||    
T  606118 taaataagtggttttcacatctatcaaatttttccttttgtgttatttgtgatttcgtcgtctaagtgcggcgttgtg 606195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 7976409 - 7976377
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatca 128  Q
    ||||||||||||||||||||||||||| |||||    
T  7976409 gggtggttttaggtcatttttgacctagaatca 7976377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 18107980 - 18107850
Alignment:
Q  97 ggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    |||||||||||||||||||| |||||| ||||| |  | |||||||||| | ||||||||| ||||||||||| |||||| |||| |||| || |||||     
T  18107980 ggtggttttaggtcattttttgacctagaatcacctctttgcatcttttacccctttctttcaaattaaataagtggttttcacacatatcaatttttc- 18107882  T
Q  196 attttgtgttttttgtgatttcgtcatctgagtg 229  Q
       |||||||||||||||||||||| ||||||||    
T  18107881 --attgtgttttttgtgatttcgtcgtctgagtg 18107850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 9169514 - 9169358
Alignment:
Q  85 tttatcgaggaggg-tggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacat 181  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| || | | ||| ||||| |||  ||||||| ||  ||||||| |||||| |||||    
T  9169514 tttatcgaggaggggtggttttaggtcatttttgacctagaatcacccctctacatttttttttcccttttctttcaatctaaataagtggttttcacat 9169415  T
Q  182 atataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     ||| ||||||| | ||||||| |||||||||||||||| ||| |||| ||| |||||    
T  9169414 ctatcaagtttttccttttgtg-tttttgtgatttcgtcgtctaagtgcggcgttgtg 9169358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 4264381 - 4264462
Alignment:
Q  148 cctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    ||||||||| || |||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||| || |||||    
T  4264381 cctttcttttaatttaaataagtggttttcacatatatcaagtttttcattttgtgttttttgtgatttcgtcgtcggagtg 4264462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 43397364 - 43397219
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||||||||||||| |||||| ||||| |  | | |||||||||| | ||||||| ||  ||||||| |||||| ||||||||| |||||||     
T  43397364 gggtggttttaggtcattttttgacctagaatcacctctctacatctttttcccttttctttcaatctaaataagtggttttcacatatatcaagttttt 43397265  T
Q  195 cattttgtgtttttt-gtgatttcgtcatctgagtgtggcattgtg 239  Q
      ||||||||||||| ||||||||||| ||| |||||||| |||||    
T  43397264 tcttttgtgttttttcgtgatttcgtcgtctaagtgtggcgttgtg 43397219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 7448093 - 7448227
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| |||||||||||||||||| | |||| ||||| || | | |||||||||| ||||| |||| ||  ||||||| |||||| ||||| ||    
T  7448093 atcgaggaggggtggttttaggtcattttttgtcctagaatcacccctctacatctttttccccttttctttcaatctaaataaatggttttcacatcta 7448192  T
Q  185 taaagttttccattttgtgttttttgtgatttcgt 219  Q
    | ||||||| | |||||||||||||||||||||||    
T  7448193 tcaagtttttccttttgtgttttttgtgatttcgt 7448227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 4778598 - 4778734
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | ||||||||| |||  ||||||| || |||||||| |||||| ||||| |    
T  4778598 atcgaggaggggtggttttaggtcattttttgacctagaatcacccctctacatctttttttcccttttctttcaatttaaataagtggttttcacatct 4778697  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtc 220  Q
    || ||||||| |  |||||||||||| ||||||||||    
T  4778698 atcaagtttttccctttgtgttttttttgatttcgtc 4778734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 38445022 - 38445156
Alignment:
Q  97 ggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctccttt--ctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    |||||||||||||||||||||| ||| ||||| || | | |||||||||  |||||  |||| ||  ||||||| |||||| ||||| ||| |||||||     
T  38445022 ggtggttttaggtcatttttgatctagaatcacccctctacatcttttttccctttttctttcaatataaataagtggttttcacatctatcaagttttt 38445121  T
Q  195 cattttgtgttttttgtgatttcgtcatctgagtg 229  Q
      |||||||||||||||||||||||| ||| ||||    
T  38445122 tcttttgtgttttttgtgatttcgtcgtctaagtg 38445156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 11985483 - 11985330
Alignment:
Q  89 tcgaggag-ggtggttttaggtcatttttga-cctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatatat 185  Q
    |||||||| |||||||||| ||||||||| | |||| ||||| || | | || ||||||| ||||| |||| || |||||||| |||||| |||||||||    
T  11985483 tcgaggagtggtggttttaagtcattttttaacctagaatcacccctctacaactttttccccttttctttcaatttaaataagtggttttcacatatat 11985384  T
Q  186 aaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
     |||||||   |||||||| ||||||||||||||| ||| |||| ||| |||||    
T  11985383 caagttttttcttttgtgtgttttgtgatttcgtcgtctaagtgcggctttgtg 11985330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 4098956 - 4099103
Alignment:
Q  95 agggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagtt 191  Q
    ||||||| |||||||||||||| |||||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| ||| |||||    
T  4098956 agggtggctttaggtcattttttgacctagaatcacccatctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaagtt 4099055  T
Q  192 ttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || | ||||||||||||||| |||||||| ||| |||| ||| |||||    
T  4099056 tttccttttgtgttttttgtaatttcgtcgtctaagtgcggcgttgtg 4099103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 28871959 - 28871871
Alignment:
Q  142 ttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttt-tgtgatttcgtcatctgagtg 229  Q
    ||||||||||||||| || |||||||| || ||| |||| |||| ||||||| |||||||||||||| |||||||||||  ||||||||    
T  28871959 ttttctcctttctttcaatttaaataagtgattttcacacatatcaagtttttcattttgtgtttttatgtgatttcgttgtctgagtg 28871871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 32448875 - 32448731
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatt-tttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || | |||||||||||| |||||||||  |  ||||||| || ||| |||  ||||    
T  32448875 atcgaggaggggtggttttaggtcattatttgacctaaaatcacccctctgcatctttttcccctttctttcgatctaaataagtgattttcaccaatat 32448776  T
Q  186 aaagttttccattttgtg-ttttttgtgatttcgtcatctgagtg 229  Q
     |||  ||  |||||||| ||||||||||||||||| ||| ||||    
T  32448775 caagcgttttattttgtgtttttttgtgatttcgtcgtctaagtg 32448731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 19062605 - 19062462
Alignment:
Q  88 atcgaggagggtggttttaggtcattttt-gacctaaaatcatccttatgcatc-tttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    |||||||||||||||||||||| |||||| || ||| ||||| || | | |||| |||||| | ||||||| ||  ||||||| |||||| ||||| |||    
T  19062605 atcgaggagggtggttttaggttattttttgaactagaatcacccctctacatcctttttcccttttctttcaatctaaataagtggttttcacatctat 19062506  T
Q  186 aaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
     ||||||| | |||| ||||||||||||| ||||| ||| ||||    
T  19062505 caagtttttccttttatgttttttgtgatatcgtcgtctaagtg 19062462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 29279768 - 29279689
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtc 220  Q
    |||| ||| ||||||| ||  ||||||| |||||| ||||||||| ||||||| | ||||||||||||||||||||||||    
T  29279768 ttttcctcttttctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtgttttttgtgatttcgtc 29279689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 8809137 - 8809250
Alignment:
Q  97 ggtggttttaggtcatttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagttttc 194  Q
    ||||||||||| |||||||||||||||||||| || | | |||||||||  ||| ||||||| ||   |||||| ||| || ||||||||| |||||||     
T  8809137 ggtggttttagatcatttttgacctaaaatcacccctctacatcttttttcctcttttctttcaatcaaaataagtggcttgcacatatattaagttttt 8809236  T
Q  195 cattttgtgttttt 208  Q
    | ||||||||||||    
T  8809237 ccttttgtgttttt 8809250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 4904322 - 4904245
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    ||||||| |||||| ||||||||| |||||||   |||||||||||||||||||||||| ||  |||||||| |||||    
T  4904322 taaataagtggttttcacatatatcaagttttttcttttgtgttttttgtgatttcgtcgtcaaagtgtggcgttgtg 4904245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 4041792 - 4041704
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    |||||| | ||||||| ||  ||||||| |||||| ||||| ||| ||||||| | |||||||||||||||||||||||| ||| ||||    
T  4041792 tttttcccgtttctttcaatctaaataagtggttttcacatctatcaagtttttccttttgtgttttttgtgatttcgtcttctaagtg 4041704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 7646317 - 7646463
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc---tttctttgaaattaaataattggtttccacata 182  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || | | ||||||||| |||   |||||||  |  ||||||| |||||| |||||     
T  7646317 atcgaggaggggtggttttaggtcattttttgacctagaatcacccctctacatctttttttccccttttctttcgatctaaataagtggttttcacatc 7646416  T
Q  183 tataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    ||  ||||||| | ||||||||||| |||||||||||| ||| ||||    
T  7646417 taccaagtttttccttttgtgttttctgtgatttcgtcgtctaagtg 7646463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 28718192 - 28718104
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatata 184  Q
    |||||||||||||||||||||||| || |||||| | | |||||||||||  |||||||||  |  ||||||| || ||||||||||||    
T  28718192 gggtggttttaggtcatttttgacatagaatcattcatctgcatcttttttccctttctttcgacataaataactgatttccacatata 28718104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 12554358 - 12554275
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtgatgtcc 245  Q
    |||||||  ||||| |||| |||| |||||||  ||||||||||||||||||||| ||| |||||||| ||| ||||| |||||    
T  12554358 taaataagaggttttcacacatatcaagtttttaattttgtgttttttgtgattttgtcgtctgagtgcggcgttgtgttgtcc 12554275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 39311102 - 39310959
Alignment:
Q  88 atcgaggagggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatata 186  Q
    |||||| | |||| ||||||||||||||| |||||| ||||| || | | | ||||||| || |||  || |||  |||||| |||||| ||||| |||     
T  39311102 atcgagaatggtgattttaggtcattttttgacctagaatcacccatctacgtctttttttcattttctttaaa--aaataagtggttttcacatttatc 39311005  T
Q  187 aagttttccattttgtgttttttgtgatttcgtcatctgagtgtgg 232  Q
    ||||||| | ||||| ||||||||||||||| |||||| |||||||    
T  39311004 aagtttttccttttgggttttttgtgatttcatcatctaagtgtgg 39310959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 11833338 - 11833430
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatc--tttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    |||||||||||||||| |||||||| ||||||||| | | | ||||  |||||||| ||||||| || |||||||| |||||| |||||||||    
T  11833338 gggtggttttaggtcattttttgacttaaaatcattcctttacatctttttttctcttttctttcaatttaaataagtggttttcacatatat 11833430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 29173895 - 29173810
Alignment:
Q  163 aaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtgatgtccatc 248  Q
    |||||| |||||| ||||||| | | ||||| | |||||||||||||||||||||||| ||| |||| ||| ||||| ||| ||||    
T  29173895 aaataagtggttttcacatatttcaggtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtgttgttcatc 29173810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 31128977 - 31128897
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcat 222  Q
    |||| ||| ||||||| ||  ||||||| |||||| ||||||||| ||||||| | |||||||| |||||||||||||||||    
T  31128977 ttttcctcttttctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtgt-ttttgtgatttcgtcat 31128897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 37994128 - 37994216
Alignment:
Q  95 agggtggttttaggtcatttttgacctaaaatcatccttatgcatctt-tttctcctttctttgaaattaaataattggtttccacata 182  Q
    |||||||||||||||||||||||||||| ||||| || | ||||| || |||| |||||||||  | |||||||| || ||| ||||||    
T  37994128 agggtggttttaggtcatttttgacctagaatcacccctctgcattttgtttcccctttctttcgatttaaataagtgattttcacata 37994216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 13014980 - 13014899
Alignment:
Q  135 tgcatctttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttc 217  Q
    ||||||||||| || ||||||| || |||||||| | ||||  ||| |||| ||||||| |||||||||||| ||||||||||    
T  13014980 tgcatctttttttc-tttctttcaatttaaataagttgtttttacacatatcaagtttttcattttgtgtttcttgtgatttc 13014899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 16375869 - 16375956
Alignment:
Q  159 aattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtgatgtccatc 248  Q
    |||||||||| || ||| ||||||||| |||||||   | ||||||||||||||||||| || ||||| || ||||||||| ||| ||||    
T  16375869 aattaaataaatgattttcacatatatcaagttttt--tcttgtgttttttgtgatttcatcgtctgaatgcggcattgtgttgttcatc 16375956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 37876852 - 37876786
Alignment:
Q  88 atcgaggaggg-tggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctccttt 152  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||| |||| | |||||||||| |||||    
T  37876852 atcgaggaggggtggttttaggtcaatttttgacctagaatcacccttgtacatctttttccccttt 37876786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 37416556 - 37416605
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatcttttt 145  Q
    ||||| |||||||||||||||| |||| |||||||||| ||||| |||||    
T  37416556 gggtgattttaggtcatttttgtcctagaatcatccttctgcatattttt 37416605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 3308793 - 3308928
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatc-tttttctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||| |||||||||| ||||||||||| ||||| || | |||||| |||||| ||||| ||| ||  ||||||| || ||| |||||| || |||||||    
T  3308793 gggtgattttaggtcaatttttgacctagaatcacccctttgcatcttttttcccctttatttcaatctaaataagtgattttcacatacatcaagtttt 3308892  T
Q  194 ccattttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
     | ||| ||||||||| ||||||||||| ||| ||||    
T  3308893 tc-tttcgtgttttttcgtgatttcgtcgtcttagtg 3308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 8893256 - 8893216
Alignment:
Q  199 ttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||||||||||||||||||||| ||||||| || |||||    
T  8893256 ttgtgttttttgtgatttcgtcatttgagtgttgcgttgtg 8893216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 12648169 - 12648073
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatcttttt-ctcctttctttgaaattaaataattggtttccacatatataaagt 190  Q
    ||||||||||||||||||||| |||||| ||||| || |   ||||||||| ||| ||||||| ||  ||||||| || ||||||||||||| ||||    
T  12648169 gggtggttttaggtcattttttgacctagaatcacccctccacatcttttttctcttttctttcaatctaaataagtgatttccacatatatcaagt 12648073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 14955368 - 14955476
Alignment:
Q  88 atcgaggaggg-tggttttaggtca-tttttgacctaaaatcatccttatgcatc-tttttctcctttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| || ||||| |||| ||||||||||| |||||||| | |||||| ||||||  |||||||| ||  ||||||| || |||||||||| |    
T  14955368 atcgaggaggggtgattttaagtcaatttttgacctagaatcatccctctgcatcttttttcctctttctttcaatctaaataagtgatttccacataca 14955467  T
Q  185 taaagtttt 193  Q
    | |||||||    
T  14955468 tcaagtttt 14955476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 15336 - 15471
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||||||| |||||| ||||| || | | |||||||||| ||||| |||| ||  ||||||| |||||| || || | | |||||||    
T  15336 gggtggttttaggtcattttttgacctagaatcacccctctacatctttttccccttttctttcaatctaaataagtggttttcatatctttcaagtttt 15435  T
Q  194 ccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
     | |||||||||||||||||||||||||||| ||||    
T  15436 tccttttgtgttttttgtgatttcgtcatctaagtg 15471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 72118 - 71963
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| | || | |||||||||| ||  ||||||| ||   |||||| |||||| ||||| |    
T  72118 atcgaggaggggtggttttaggtcattttttgacctagaatcaccattcttcatctttttcccccttttctttcaatccaaataagtggttttcacatct 72019  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || ||||||| |  ||||||||||||||||||||||| ||| |||| ||| |||||    
T  72018 atcaagtttttccatttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 71963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 6216729 - 6216869
Alignment:
Q  88 atcgagga-gggtggttttaggtcatt-tttgacctaaaatcatccttatgcatct-ttttctccttt-----ctttgaaattaaataattggtttccac 179  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| | | ||| | ||||| |||||     |||| ||  ||||||| |||||| |||    
T  6216729 atcgaggatgggtggttttaggtcattctttgacctaaaatcatccatctacatttgttttcccctttgctttctttcaatctaaataagtggttttcac 6216828  T
Q  180 atatataaagttttccattttgtgttttttgtgatttcgtc 220  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  6216829 atatatcaagtttttccttttgtgttttttgtgatttcgtc 6216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 13007063 - 13007218
Alignment:
Q  88 atcgaggag-ggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||| |||||||||||||||||||| |||||| ||||| || | | || ||||||  ||  ||||||| ||  ||||||| |||||| ||||| |    
T  13007063 atcgaggagaggtggttttaggtcattttttgacctagaatcacccctctacaccttttttcccattttctttcaatctaaataagtggttttcacatct 13007162  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    || ||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||    
T  13007163 atcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtgcggcgttgtg 13007218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 15571347 - 15571475
Alignment:
Q  112 tttttgacctaaaatcatccttatgcatcttttt-ctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttg 210  Q
    ||||||||||| |||||||| |   ||||||||| ||| ||||||| ||  ||||||| |||||| ||||||||| ||||||| | ||||||  ||||||    
T  15571347 tttttgacctagaatcatccatcaacatcttttttctcatttctttcaatctaaataagtggttttcacatatatcaagtttttccttttgtaatttttg 15571446  T
Q  211 tgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||||||| ||| |||||||| |||||    
T  15571447 tgatttcgtcgtctaagtgtggcgttgtg 15571475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 38597632 - 38597786
Alignment:
Q  88 atcgaggaggg-tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcct-ttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| ||||||||||| |||||| |||||| ||||| || | | |||||||||  ||| |||||| || |||||||| || ||| ||||| ||    
T  38597632 atcgaggaggggtggttttaggttattttttgacctagaatcacccctctacatcttttttccctattctttcaatttaaataagtgattttcacatcta 38597731  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | ||||||| | ||||||| |||||||||||||||| ||| |||| ||| |||||    
T  38597732 tcaagtttttccttttgtgctttttgtgatttcgtcgtctaagtgcggcgttgtg 38597786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 11074146 - 11074019
Alignment:
Q  94 gagggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagtt 191  Q
    |||||||||||||||| |||||||||||| |||||||  | | | ||||||| |||  ||||||| ||  ||||||| ||| || ||||| ||| |||||    
T  11074146 gagggtggttttaggttatttttgacctagaatcatcactctacgtctttttttcccttttcttttaatctaaataagtggctttcacatctatcaagtt 11074047  T
Q  192 ttccattttgtgttttttgtgatttcgt 219  Q
    || | |||||| ||||||||||||||||    
T  11074046 tttccttttgtattttttgtgatttcgt 11074019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 9113979 - 9113834
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttttga-cctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatat 183  Q
    ||||||||||| || ||||||||||||||| | |||| ||||| || | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| |    
T  9113979 atcgaggaggggtgattttaggtcattttttaacctagaatcacccctctacatcttttttcccattttcttttaatctaaataagtggttttcacatct 9113880  T
Q  184 ataaagttttccattttgtgttttttgtgatttcgtcatctgagtg 229  Q
    || ||||||| | |||||||||||||||||||||||| ||| ||||    
T  9113879 atcaagtttttccttttgtgttttttgtgatttcgtcgtctaagtg 9113834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 14211068 - 14211173
Alignment:
Q  88 atcgaggagggtggttttaggtc-atttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatata 186  Q
    ||||||||||||| ||||||||| |||||||||||| ||||| || | |||||||||||| ||||||||| ||  ||||||| || ||| |||||| ||     
T  14211068 atcgaggagggtgattttaggtcaatttttgacctagaatcacccctctgcatctttttc-cctttctttcaatctaaataagtgattttcacatacatc 14211166  T
Q  187 aagtttt 193  Q
    |||||||    
T  14211167 aagtttt 14211173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 41630341 - 41630470
Alignment:
Q  88 atcgaggagggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatataa 187  Q
    ||||| || |||||||||||||||||||||||||| ||||| |  | | |||||||||| | ||||||| ||  |||||||   |||| ||||| |||||    
T  41630341 atcgaagatggtggttttaggtcatttttgacctagaatca-ctctctacatctttttcccatttctttcaatctaaataagccgttttcacatctataa 41630439  T
Q  188 agttttccattttgtgttttttgtgatttcg 218  Q
    |||||| | ||||||  ||||||||||||||    
T  41630440 agtttttctttttgtagtttttgtgatttcg 41630470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 34945268 - 34945391
Alignment:
Q  99 tggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttttcc 195  Q
    |||||||||||||||||| |||||| ||||| |||| | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| ||| ||||||| |    
T  34945268 tggttttaggtcattttttgacctagaatcacccttctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaagtttttc 34945367  T
Q  196 attttgtgttttttgtgatttcgtc 220  Q
     ||||||| ||||||||||||||||    
T  34945368 cttttgtg-tttttgtgatttcgtc 34945391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 38007192 - 38007299
Alignment:
Q  88 atcgaggaggg-tggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||||| ||||||||||||| ||||||||||  ||||| || | | |||||||||| | ||||||| || |||||||| |||||| |||| ||||    
T  38007192 atcgaggaggggtggttttaggtcattttttgacctcgaatcacccctctacatctttttcccttttctttcaatttaaataagtggttttcacacatat 38007291  T
Q  186 aaagtttt 193  Q
     |||||||    
T  38007292 caagtttt 38007299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 26878332 - 26878186
Alignment:
Q  88 atcgaggag-ggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||| |||||||||| ||||||||||| ||| ||||| |  | | |||||||||| ||  ||||||| ||  ||||||| |||||| |||||| |    
T  26878332 atcgaggagaggtggttttatgtcatttttgatctagaatcacctctctacatctttttcccccttttctttcaatctaaataagtggttttcacataaa 26878233  T
Q  185 taaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggc 233  Q
    | |||||||   ||||||  |||||||||||||||| ||| ||||||||    
T  26878232 tcaagttttttcttttgt--tttttgtgatttcgtcgtctaagtgtggc 26878186  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 6012383 - 6012259
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    ||||||||||||||||||||| ||| || ||||| || | | ||||||||| |||  ||||||| ||  ||||||| || ||| ||| | ||| ||||||    
T  6012383 gggtggttttaggtcattttttgacatagaatcacccctctacatctttttttcccttttctttcaatctaaataagtgtttttcacgtctatcaagttt 6012284  T
Q  193 tccattttgtgttttttgtgatttc 217  Q
    | | |||||||||||||||||||||    
T  6012283 ttccttttgtgttttttgtgatttc 6012259  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 11977134 - 11977035
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgtt--ttttgtgatttcgtcatctgagtgtggcattgt 238  Q
    |||||| | ||||||| ||  ||||||| |||||| ||||||||| |||||||   |||||||||  ||||||||||||||| ||| |||||||| ||||    
T  11977134 tttttcccttttctttcaatctaaataagtggttttcacatatatcaagttttttcttttgtgttttttttgtgatttcgtcgtctaagtgtggcgttgt 11977035  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 2979566 - 2979422
Alignment:
Q  88 atcgaggaggg-tggttttaggtca-tttttgacctaaaatcatccttatgcatct-ttttctcctttctttgaaattaaataattggtttccacatata 184  Q
    ||||||||||| || |||||||||| ||||||||||| ||||| || | ||||||| |||||  |||||||| ||  ||||||| || ||| |||||| |    
T  2979566 atcgaggaggggtgattttaggtcaatttttgacctataatcacccctctgcatcttttttcctctttctttcaatctaaataagtgattttcacataca 2979467  T
Q  185 taaagttttccattttgtgtttttt-gtgatttcgtcatctgagtg 229  Q
    | ||||||| | ||| ||||||||| ||||||||||| ||| ||||    
T  2979466 tcaagtttttc-tttcgtgttttttcgtgatttcgtcgtcttagtg 2979422  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 7036071 - 7036163
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatat 185  Q
    |||||||||||||||| |||||||||||||||||  | | | |||||||||  ||| ||||||| ||  ||||||| |||||| |||||||||    
T  7036071 gggtggttttaggtcattttttgacctaaaatcactcatctacatcttttttcctcttttctttcaatctaaataagtggttttcacatatat 7036163  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 11767683 - 11767735
Alignment:
Q  97 ggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctc 148  Q
    ||||||||||||||| |||||||||||||||||||  | | ||||||||||||    
T  11767683 ggtggttttaggtcaatttttgacctaaaatcatctgtcttcatctttttctc 11767735  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 11867524 - 11867556
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatca 128  Q
    |||| ||||||||||||||||||||||||||||    
T  11867524 gggtagttttaggtcatttttgacctaaaatca 11867556  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 35850616 - 35850660
Alignment:
Q  85 tttatcgaggaggg-tggttttaggtcatttttgacctaaaatca 128  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||    
T  35850616 tttatcgaggaggggtggttttaggtcttttttgacctagaatca 35850660  T

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Target: scaffold0262 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 2056 - 1931
Alignment:
Q  102 ttttaggtcatttttgacctaaaatcatccttatgcatcttttt--ctcctttctttgaaattaaataattggtttccacatatataaagttttccattt 199  Q
    ||||||||| ||||| |||||||||||  | | | |||||||||  ||| ||||||| || |||||||| |||||| ||||||||| ||||||| | |||    
T  2056 ttttaggtctttttttacctaaaatcactcatctacatcttttttcctcttttctttcaatttaaataagtggtttgcacatatatcaagtttttccttt 1957  T
Q  200 tgtgttttttgtgatttcgtcatctga 226  Q
    ||||| ||||||||||||||| |||||    
T  1956 tgtgt-ttttgtgatttcgtcgtctga 1931  T

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Target: scaffold0088 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 50630 - 50776
Alignment:
Q  96 gggtggttttaggtca-tttttgacctaaaatcatccttatgcatctttttctcc--tttctttgaaattaaataattggtttccacatatataaagttt 192  Q
    ||||| |||||||||| ||||||||||| |||||||| | | |||||||||  ||  ||||||| ||  ||||||| |||||| ||||| ||| ||||||    
T  50630 gggtgattttaggtcactttttgacctagaatcatccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaagttt 50729  T
Q  193 tccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | | |||||||||||| ||||||||||| ||| |||| ||| |||||    
T  50730 ttccttttgtgtttttcgtgatttcgtcgtctaagtgcggcgttgtg 50776  T

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Target: scaffold0492 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 12743 - 12897
Alignment:
Q  80 tttgatttatcgaggag-ggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttc 176  Q
    ||||||| ||| ||||| |||||||||||||||||||| |||||| ||||| |  ||| ||| |||||||||||| || | || |||||||| ||||||     
T  12743 tttgattcatcaaggagaggtggttttaggtcattttttgacctagaatcaccgctatacatatttttctccttttctatcaatttaaataagtggtttt 12842  T
Q  177 cacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtg 231  Q
    |||||| || |||| || | |||||||||||| ||||||| ||| ||| ||||||    
T  12843 cacatacatcaagtgtttcgttttgtgtttttcgtgattttgtcgtctaagtgtg 12897  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 58324 - 58178
Alignment:
Q  96 gggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctcc-tttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    ||||||||||||||||||||| |||||||||||| || | |||||| |||| ||| ||||||| ||  ||||||| || ||||||||||||| |||| ||    
T  58324 gggtggttttaggtcattttttgacctaaaatcacccctctgcatccttttttccttttctttcaatctaaataagtgatttccacatatatcaagtgtt 58225  T
Q  194 ccattttgtg-ttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
       ||||||| ||||| |||||||| || |||||||| ||| |||||    
T  58224 ttcttttgtgctttttcgtgatttcatcgtctgagtgcggcgttgtg 58178  T

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Target: scaffold0136 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 37938 - 38035
Alignment:
Q  141 tttttctcctttctttgaaattaaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    |||||| ||||||||| ||  ||||||| |||||| ||||||| | ||||||| | ||||||||||||| | |||||||||||| |||| |||||||||    
T  37938 tttttcccctttctttcaatctaaataagtggttttcacatatgtcaagtttttccttttgtgtttttt-ttatttcgtcatctaagtgcggcattgtg 38035  T

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Target: scaffold0136; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 10217 - 10142
Alignment:
Q  162 taaataattggtttccacatatataaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgt 238  Q
    ||||||| |||||| ||||||||| ||||||| | |||||||| ||||||||||||||| ||| |||| ||| ||||    
T  10217 taaataagtggttttcacatatatcaagtttttccttttgtgt-ttttgtgatttcgtcgtctaagtgcggctttgt 10142  T

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Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 71527 - 71438
Alignment:
Q  96 gggtggttttaggtcatttttgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||||||||||||||||||||||||||| || | | ||| |||| ||| ||||||| ||  |||| || |||||| |||||||||    
T  71527 gggtggttttaggtcatttttgacctaaaatcacccctctacatattttcctcttttctttcaatctaaacaagtggttttcacatatat 71438  T

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Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 33005 - 32856
Alignment:
Q  85 tttatcgaggagg-gtggttttaggtcattttt-gacctaaaatcatccttatgcatctttt-tctccttt-ctttgaaattaaataattggtttccaca 180  Q
    ||||||||||||| ||||||||||||||||||| ||| || ||||| || | | |||||||| || ||||| |||| ||  ||||||| |||||| ||||    
T  33005 tttatcgaggaggagtggttttaggtcattttttgacatagaatcacccctctacatcttttgtccccttttctttcaatctaaataagtggttttcaca 32906  T
Q  181 tatataaagttttccattttgtgtt-ttttgtgatttcgtcatctgagtg 229  Q
    | ||| ||||||| | ||||||||| ||||||||||||||| ||| ||||    
T  32905 tctatcaagtttttccttttgtgtttttttgtgatttcgtcgtctaagtg 32856  T

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Target: scaffold0634 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 8349 - 8501
Alignment:
Q  88 atcgaggaggg-tggttttaggtcatttt-tgacctaaaatcatccttatgcatctttttctcctttctttgaaattaaataattggtttccacatatat 185  Q
    ||||||||||| |||||||| || ||||| ||||||| ||||| || | | || |||||| || ||||||| ||  ||||||| ||||||  ||||||||    
T  8349 atcgaggaggggtggttttaagttattttttgacctataatcacccctctacacctttttttcttttcttttaagctaaataagtggtttttacatatat 8448  T
Q  186 aaagttttccattttgtgttttttgtgatttcgtcatctgagtgtggcattgt 238  Q
      ||||||   ||||||| |||||||||||||||||||| |||| ||| ||||    
T  8449 ccagtttttgcttttgtgatttttgtgatttcgtcatctaagtgcggcgttgt 8501  T

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Target: scaffold0445 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 1179 - 1334
Alignment:
Q  88 atcgaggag-ggtggttttaggtcattttt-gacctaaaatcatccttatgcatctttttctccttt-ctttgaaattaaataattggtttccacatata 184  Q
    ||||||||| |||||||||||||||||||| |||||| ||||| || | | | |||||||  ||||| |||| |   ||||||| |||||| ||||||||    
T  1179 atcgaggagaggtggttttaggtcattttttgacctagaatcacccctctacttcttttttcccttttctttcactctaaataagtggttttcacatata 1278  T
Q  185 taaagttttccattttgtg-ttttttgtgatttcgtcatctgagtgtggcattgtg 239  Q
    | ||||||||  ||||||| |||||||||||||| || ||| |||| ||| |||||    
T  1279 tcaagttttctcttttgtgtttttttgtgatttcttcgtctaagtgcggcgttgtg 1334  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 92944 - 93043
Alignment:
Q  96 gggtggttttaggtcatttt-tgacctaaaatcatccttatgcatc-tttttctcctttctttgaaattaaataattggtttccacatatataaagtttt 193  Q
    |||||||||||||| ||||| ||||||| |||||||||  |||||| |||||||||||||||| ||  ||||||| || ||| | | ||||| |||||||    
T  92944 gggtggttttaggttattttttgacctagaatcatcctcgtgcatcttttttctcctttctttcaatctaaataagtgatttacgcttatatcaagtttt 93043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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