View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_246 (Length: 256)
Name: NF0154_2D_low_246
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_246 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32853868 - 32854089
Alignment:
| Q |
1 |
aatgccttccatgacctctgttggaaggatgtccacgaaatgagtcccgtcttccttcttgtcgcgagttggaactctggatattcatctttgcttgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32853868 |
aatgccttccatgacctctgttggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagttggaactccggatattcatctttgcttgaaa |
32853967 |
T |
|
| Q |
101 |
aacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaagaacccatcaattcatattgtgagagttttgtgaggtccttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32853968 |
aacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcagttcatattgtgagagttttgtgaggtccttt |
32854067 |
T |
|
| Q |
201 |
gtttcttcaataacagcaacaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
32854068 |
gtttcttcaataacagcaacaa |
32854089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37177003 - 37177224
Alignment:
| Q |
1 |
aatgccttccatgacctctgttggaaggatgtccacgaaatgagtcccgtcttccttcttgtcgcgagttggaactctggatattcatctttgcttgaaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37177003 |
aatgccttccatgacctatgttggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagttggaactccggatattcatctttgcttgaaa |
37177102 |
T |
|
| Q |
101 |
aacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaagaacccatcaattcatattgtgagagttttgtgaggtccttt |
200 |
Q |
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| T |
37177103 |
aacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaatttatattgtgagagttttgtgaggtccttt |
37177202 |
T |
|
| Q |
201 |
gtttcttcaataacagcaacaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37177203 |
gtttcttcaataacagcaacaa |
37177224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 32853452 - 32853424
Alignment:
| Q |
216 |
gcaacaaacaattcattcatgatgtccat |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32853452 |
gcaacaaacaattcattcatgatgtccat |
32853424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 37176588 - 37176560
Alignment:
| Q |
216 |
gcaacaaacaattcattcatgatgtccat |
244 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
37176588 |
gcaacaaacaattcattcatgatgtccat |
37176560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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