View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_256 (Length: 248)

Name: NF0154_2D_low_256
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_256
NF0154_2D_low_256
[»] chr8 (9 HSPs)
chr8 (20-176)||(24479361-24479517)
chr8 (131-176)||(4054174-4054219)
chr8 (131-176)||(42768342-42768387)
chr8 (128-176)||(34186745-34186793)
chr8 (132-176)||(36660339-36660383)
chr8 (130-174)||(37449312-37449356)
chr8 (130-176)||(12898816-12898862)
chr8 (122-176)||(36251464-36251518)
chr8 (130-174)||(27325898-27325942)
[»] chr6 (8 HSPs)
chr6 (122-176)||(1156858-1156912)
chr6 (129-176)||(32316814-32316861)
chr6 (130-176)||(33430249-33430295)
chr6 (131-176)||(552931-552976)
chr6 (131-176)||(14818070-14818115)
chr6 (130-176)||(15974746-15974792)
chr6 (129-158)||(8098495-8098524)
chr6 (131-176)||(31077932-31077977)
[»] chr5 (19 HSPs)
chr5 (126-176)||(5168321-5168371)
chr5 (131-176)||(7287077-7287122)
chr5 (132-176)||(1764362-1764406)
chr5 (121-176)||(1671680-1671735)
chr5 (130-176)||(18258680-18258726)
chr5 (130-176)||(26791131-26791177)
chr5 (130-176)||(36739086-36739132)
chr5 (131-176)||(28306020-28306065)
chr5 (131-176)||(33037658-33037703)
chr5 (132-176)||(13168660-13168704)
chr5 (129-176)||(14051201-14051248)
chr5 (134-176)||(2972462-2972504)
chr5 (126-176)||(15479607-15479657)
chr5 (130-176)||(28467340-28467386)
chr5 (139-176)||(7076464-7076501)
chr5 (127-155)||(1079848-1079876)
chr5 (130-170)||(1274501-1274541)
chr5 (130-170)||(8687035-8687075)
chr5 (130-170)||(35634722-35634762)
[»] chr4 (16 HSPs)
chr4 (126-176)||(36178044-36178094)
chr4 (130-176)||(29175363-29175409)
chr4 (130-176)||(31641452-31641498)
chr4 (130-176)||(44539872-44539918)
chr4 (131-176)||(39440622-39440667)
chr4 (129-172)||(26724858-26724901)
chr4 (130-176)||(23369219-23369265)
chr4 (130-176)||(26732363-26732409)
chr4 (130-176)||(37297186-37297232)
chr4 (130-176)||(51986180-51986226)
chr4 (127-176)||(27965123-27965172)
chr4 (131-176)||(53801647-53801692)
chr4 (134-173)||(11068829-11068868)
chr4 (131-174)||(43175124-43175167)
chr4 (130-176)||(27050973-27051019)
chr4 (131-176)||(38376378-38376423)
[»] chr7 (7 HSPs)
chr7 (129-174)||(24614202-24614247)
chr7 (131-176)||(41989628-41989673)
chr7 (131-176)||(38956506-38956551)
chr7 (130-173)||(43942773-43942816)
chr7 (130-176)||(3937010-3937056)
chr7 (130-176)||(25192804-25192850)
chr7 (129-176)||(41189427-41189476)
[»] chr1 (20 HSPs)
chr1 (129-176)||(33100946-33100993)
chr1 (131-174)||(44519039-44519082)
chr1 (130-176)||(19055646-19055692)
chr1 (130-176)||(27464944-27464990)
chr1 (130-176)||(31088319-31088365)
chr1 (130-176)||(45121368-45121414)
chr1 (131-176)||(15469945-15469989)
chr1 (131-176)||(26469497-26469542)
chr1 (131-176)||(48470777-48470822)
chr1 (131-176)||(50726136-50726181)
chr1 (130-176)||(649907-649953)
chr1 (131-165)||(6693294-6693328)
chr1 (131-176)||(8350087-8350132)
chr1 (135-176)||(35369838-35369879)
chr1 (131-176)||(37685467-37685512)
chr1 (131-176)||(37700006-37700051)
chr1 (128-176)||(52576186-52576235)
chr1 (130-158)||(29359781-29359809)
chr1 (127-171)||(30570667-30570711)
chr1 (127-171)||(49647035-49647079)
[»] chr2 (15 HSPs)
chr2 (130-176)||(9647270-9647316)
chr2 (130-176)||(9990829-9990875)
chr2 (130-176)||(32477470-32477516)
chr2 (130-176)||(42421785-42421831)
chr2 (129-176)||(41195722-41195769)
chr2 (130-176)||(18254096-18254142)
chr2 (130-176)||(22888704-22888750)
chr2 (130-174)||(1248826-1248870)
chr2 (134-176)||(6049236-6049278)
chr2 (130-176)||(9194379-9194425)
chr2 (130-176)||(9760156-9760202)
chr2 (130-176)||(21611542-21611588)
chr2 (130-176)||(37737858-37737904)
chr2 (132-176)||(9207728-9207772)
chr2 (124-176)||(27490611-27490663)
[»] chr3 (20 HSPs)
chr3 (131-176)||(36670902-36670947)
chr3 (131-176)||(37503635-37503680)
chr3 (129-176)||(41309255-41309302)
chr3 (130-176)||(27541389-27541435)
chr3 (130-176)||(33939376-33939422)
chr3 (130-176)||(46624045-46624091)
chr3 (131-176)||(13735868-13735913)
chr3 (131-176)||(16969454-16969499)
chr3 (130-175)||(31157564-31157609)
chr3 (131-176)||(32924169-32924214)
chr3 (127-176)||(52939789-52939838)
chr3 (132-176)||(35597300-35597344)
chr3 (129-172)||(55151603-55151646)
chr3 (134-176)||(42358529-42358571)
chr3 (130-176)||(52326157-52326203)
chr3 (131-176)||(7934112-7934157)
chr3 (131-176)||(19149128-19149173)
chr3 (131-176)||(42356972-42357017)
chr3 (130-176)||(42478095-42478143)
chr3 (131-176)||(44413283-44413328)
[»] scaffold0199 (1 HSPs)
scaffold0199 (130-176)||(8806-8852)
[»] scaffold0056 (1 HSPs)
scaffold0056 (130-176)||(76506-76552)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 24479517 - 24479361
Alignment:
Q  20 aattccaccattgcatgacccaatctacaaagaagagggatggttgtgcatatgcaacaacaagtgttacacacccaatccatgatgacattaggttacc 119  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24479517 aattccaccattgcaagacccaatctacaaatcagagggatggttgtgcatatgcaacaacaagtgttacacacccaatccatgatgacattaggttacc 24479418  T
Q  120 ttttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
     |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  24479417 ctttatgtttagagttgtgttatttgagcattcatatatatgataacttttgtgaca 24479361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 4054174 - 4054219
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  4054174 gagttgtgttatttgaacatttatatatgtgacaacttttgtgaca 4054219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 42768387 - 42768342
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||    
T  42768387 gagttgtgttatttgaacatccatatatgtgataatttttgtgaca 42768342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 34186793 - 34186745
Alignment:
Q  128 ttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||| |||| || ||| |||||||||||||    
T  34186793 ttagagttgtgttatttgaacatccatacatgtgacaacttttgtgaca 34186745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 36660339 - 36660383
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||| |||| || |||||||||||||||||    
T  36660339 agttgtgttatttgaacatccataaatgtgataacttttgtgaca 36660383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 37449312 - 37449356
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||| || ||||||| |||||||||||||||    
T  37449312 agagttgtgttatttgaatatccatatatgtgataacttttgtga 37449356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 12898816 - 12898862
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||| |||||||||||||| ||||||| ||| |||||||||||||    
T  12898816 agagttatgttatttgaacatccatatatgtgacaacttttgtgaca 12898862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 36251518 - 36251464
Alignment:
Q  122 ttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||| || | |||||||||||||| ||||||| |||||||||| ||||||    
T  36251518 ttatgtttaaagctctgttatttgaacatccatatatgtgataactttcgtgaca 36251464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 27325942 - 27325898
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    ||||||||||||||||||||| ||||||| ||| |||||| ||||    
T  27325942 agagttgtgttatttgaacatccatatatgtgacaactttcgtga 27325898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 1156912 - 1156858
Alignment:
Q  122 ttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1156912 ttatttttagagttgtgttatttgaacatccatatatttgataacttttgtgaca 1156858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 32316814 - 32316861
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  32316814 tagagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 32316861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 33430249 - 33430295
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||||    
T  33430249 agagttgtgttatttggacattcatatatgtgacaacttttgtgaca 33430295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 552976 - 552931
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  552976 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 552931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 14818115 - 14818070
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  14818115 gagttgtgttatttgaacatttatatatatgacaacttttgtgaca 14818070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 15974792 - 15974746
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| | | |||||||||||||    
T  15974792 agagttgtgttatttgaacatccatatatgtaacaacttttgtgaca 15974746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 8098495 - 8098524
Alignment:
Q  129 tagagttgtgttatttgaacattcatatat 158  Q
    ||||||||||||||||||||||||||||||    
T  8098495 tagagttgtgttatttgaacattcatatat 8098524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 31077977 - 31077932
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||| ||||||| || ||| |||||||||||||    
T  31077977 gagttgtgttatttgaatattcatacatgtgacaacttttgtgaca 31077932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 5168371 - 5168321
Alignment:
Q  126 gtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  5168371 gtttagagttgtgttatttgaacattcatatatatgacaacttttgtgaca 5168321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 7287077 - 7287122
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  7287077 gagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 7287122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 1764406 - 1764362
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||    
T  1764406 agttgtgttatttgaacattcatatatgtgacaacttttgtgaca 1764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 1671735 - 1671680
Alignment:
Q  121 tttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||| | ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  1671735 tttatggtaagagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 1671680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 18258680 - 18258726
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  18258680 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 18258726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 26791131 - 26791177
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  26791131 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 26791177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 36739132 - 36739086
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  36739132 agagttgtgttatttgaacatccatatatgtgataatttttgtgaca 36739086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 28306020 - 28306065
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  28306020 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 28306065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 33037703 - 33037658
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  33037703 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 33037658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 13168704 - 13168660
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||    
T  13168704 agttgtgttatttcaacattcatatatgtgacaacttttgtgaca 13168660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 14051201 - 14051248
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||  ||||| ||||||| |||||||||||||||||    
T  14051201 tagagttgtgttattcaaacatccatatatgtgataacttttgtgaca 14051248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 2972504 - 2972462
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||| |||||| ||| |||||||||||||    
T  2972504 ttgtgttatttgaacatttatatatgtgacaacttttgtgaca 2972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 15479657 - 15479607
Alignment:
Q  126 gtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||| |||||||||||||||||||| |||| || ||| |||||||||||||    
T  15479657 gttttgagttgtgttatttgaacatccataaatgtgacaacttttgtgaca 15479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 28467340 - 28467386
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||| ||||||||||||||| ||| || ||||||||||    
T  28467340 agagttgtgttatctgaacattcatatatgtgacaatttttgtgaca 28467386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 7076464 - 7076501
Alignment:
Q  139 ttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  7076464 ttatttgaacattcatatatgtgacaacttttgtgaca 7076501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 1079848 - 1079876
Alignment:
Q  127 tttagagttgtgttatttgaacattcata 155  Q
    |||||||||||||||||||||||||||||    
T  1079848 tttagagttgtgttatttgaacattcata 1079876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 1274541 - 1274501
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataactttt 170  Q
    ||||||||||||||||||||| ||||||| ||| |||||||    
T  1274541 agagttgtgttatttgaacatccatatatgtgacaactttt 1274501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 8687075 - 8687035
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataactttt 170  Q
    ||||| ||||||||||||||||||||||| ||| |||||||    
T  8687075 agagtagtgttatttgaacattcatatatgtgacaactttt 8687035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 35634722 - 35634762
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataactttt 170  Q
    ||||||||||||||||||||| ||||||| ||| |||||||    
T  35634722 agagttgtgttatttgaacatccatatatgtgacaactttt 35634762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 36178094 - 36178044
Alignment:
Q  126 gtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  36178094 gtttagagttgtgttatttgaacatttatatatgtgataacttttgtgaca 36178044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 29175409 - 29175363
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  29175409 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 29175363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 31641452 - 31641498
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  31641452 agagttgtgttatttgaacattcatatacgtgataacttttgtgaca 31641498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 44539918 - 44539872
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  44539918 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 44539872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 39440667 - 39440622
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  39440667 gagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 39440622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 26724858 - 26724901
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgt 172  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  26724858 tagagttgtgttatttgaacatccatatatgtgataacttttgt 26724901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 23369219 - 23369265
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  23369219 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 23369265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 26732409 - 26732363
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  26732409 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 26732363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 37297232 - 37297186
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  37297232 agagttgtgttatttgaacatccatatatttgacaacttttgtgaca 37297186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 51986226 - 51986180
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  51986226 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 51986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 27965172 - 27965123
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  27965172 tttagagttgtgttatttgaacatccatatatgtgacaacttctgtgaca 27965123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 53801647 - 53801692
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  53801647 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 53801692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 11068868 - 11068829
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtg 173  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  11068868 ttgtgttatttgaacattcatatatgtgacaacttttgtg 11068829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 43175167 - 43175124
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||    
T  43175167 gagttgtgttatttgaacatccatatatgtgacaacttttgtga 43175124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27050973 - 27051019
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||    
T  27050973 agagatgtgttatttgaacattcataaatgtgacaacttttgtgaca 27051019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 38376378 - 38376423
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||  |||||| |||||| ||||||||||    
T  38376378 gagttgtgttatttgaacatctatatatgtgataatttttgtgaca 38376423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 24614202 - 24614247
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  24614202 tagagttgtgttatttgaacattcatatatgtgataacttttgtga 24614247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 41989628 - 41989673
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  41989628 gagttgtgttatttgaacatccatatatgtgataacttttgtgaca 41989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 38956506 - 38956551
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  38956506 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 38956551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 43942816 - 43942773
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtg 173  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||    
T  43942816 agagttgtgttatttgaacatccatatatgtgataatttttgtg 43942773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 3937010 - 3937056
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||| || ||| |||||||||||||    
T  3937010 agagttgtgttatttgaacatccatacatgtgacaacttttgtgaca 3937056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 25192804 - 25192850
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||| ||||||| || ||| |||||||||||||    
T  25192804 agagttgtgttatttgaatattcatacatgtgacaacttttgtgaca 25192850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 41189427 - 41189476
Alignment:
Q  129 tagagttgtgttatttgaacattc--atatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||    
T  41189427 tagagttgtgttatttgaacattcatatatatgtgataacttttatgaca 41189476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 33100993 - 33100946
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  33100993 tagagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 33100946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 44519039 - 44519082
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  44519039 gagttgtgttatttgaacattcatatatgtgacaacttttgtga 44519082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 19055646 - 19055692
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  19055646 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 19055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27464944 - 27464990
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  27464944 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 27464990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 31088365 - 31088319
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  31088365 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 31088319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 45121368 - 45121414
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  45121368 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 45121414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 15469945 - 15469989
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  15469945 gagttgtgttatttgaacattcatatatgtgataa-ttttgtgaca 15469989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 26469542 - 26469497
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  26469542 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 26469497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 48470822 - 48470777
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  48470822 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 48470777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 50726136 - 50726181
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||    
T  50726136 gagttgtgttatttgaacatccatatatgtgataatttttgtgaca 50726181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 649953 - 649907
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| || |||| ||| |||||||||||||    
T  649953 agagttgtgttatttgaacatccacatatgtgacaacttttgtgaca 649907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 6693328 - 6693294
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataa 165  Q
    |||||||||||||||||||||||||||| ||||||    
T  6693328 gagttgtgttatttgaacattcatatatgtgataa 6693294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 8350087 - 8350132
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||| ||||||    
T  8350087 gagttgtgttatttgaacatccatatatgtgacaactttcgtgaca 8350132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 35369879 - 35369838
Alignment:
Q  135 tgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||| ||||||| ||| |||||||||||||    
T  35369879 tgtgttatttgaacatccatatatgtgacaacttttgtgaca 35369838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 37685512 - 37685467
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||| ||||||||||||||||||| || |||||| ||||||||||    
T  37685512 gagttatgttatttgaacattcatacatgtgataatttttgtgaca 37685467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 37700006 - 37700051
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||| ||||||||||||||||||| || |||||| ||||||||||    
T  37700006 gagttatgttatttgaacattcatacatgtgataatttttgtgaca 37700051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 52576186 - 52576235
Alignment:
Q  128 ttagagttgtgttatttgaac-attcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||||||  ||| |||||||||||||    
T  52576186 ttagagttgtgttatttgaacaattcatataggtgacaacttttgtgaca 52576235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 29359809 - 29359781
Alignment:
Q  130 agagttgtgttatttgaacattcatatat 158  Q
    |||||||||||||||||||||||||||||    
T  29359809 agagttgtgttatttgaacattcatatat 29359781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 30570711 - 30570667
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttg 171  Q
    |||| ||||||||||||||||||||||| ||| |||||| |||||    
T  30570711 tttaaagttgtgttatttgaacattcatttatatgataatttttg 30570667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 49647035 - 49647079
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttg 171  Q
    ||||||||| |||||||||||||||||| ||| ||| ||||||||    
T  49647035 tttagagttatgttatttgaacattcatttatatgacaacttttg 49647079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9647316 - 9647270
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||    
T  9647316 agagttgtgttatttgaacattcatatatgcgataacttttgtgaca 9647270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9990875 - 9990829
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  9990875 agagttgtgttatttgaacatccatatatgtgataacttttgtgaca 9990829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 32477516 - 32477470
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  32477516 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 32477470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 42421785 - 42421831
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  42421785 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 42421831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 41195769 - 41195722
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||    
T  41195769 tagagttgtgttatttgaacattcatatatgtaacaacttttgtgaca 41195722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 18254096 - 18254142
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  18254096 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 18254142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 22888704 - 22888750
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  22888704 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 22888750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 1248870 - 1248826
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||    
T  1248870 agagttgtgttatttgaacatccatatatgtgacaacttttgtga 1248826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 6049236 - 6049278
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  6049236 ttgtgttatttgaacatccatatatgtgacaacttttgtgaca 6049278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9194425 - 9194379
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| | | || ||||||||||    
T  9194425 agagttgtgttatttgaacattcatatatgtaacaatttttgtgaca 9194379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9760202 - 9760156
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||  |||||| ||| |||||||||||||    
T  9760202 agagttgtgttatttgaacatctatatatgtgacaacttttgtgaca 9760156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 21611542 - 21611588
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| ||||||| |||||    
T  21611542 agagttgtgttatttgaacatccatatatgtgacaacttttatgaca 21611588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 37737858 - 37737904
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||| | ||||||| ||| |||||||||||||    
T  37737858 agagttgtgttatttgaacgtccatatatgtgacaacttttgtgaca 37737904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 9207772 - 9207728
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||  |||||| |||||| ||||||||||    
T  9207772 agttgtgttatttgaacatctatatatgtgataatttttgtgaca 9207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 27490611 - 27490663
Alignment:
Q  124 atgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||| ||| |   ||| |||||||||||||    
T  27490611 atgtttagagttgtgttatttgaacatccattttgatgacaacttttgtgaca 27490663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 36670902 - 36670947
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  36670902 gagttgtgttatttgaacatccatatatgtgataacttttgtgaca 36670947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 37503635 - 37503680
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  37503635 gagttgtgttatttgaacatttatatatgtgataacttttgtgaca 37503680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 41309302 - 41309255
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||    
T  41309302 tagagttgtgttatttgaacatccatatatgcgataacttttgtgaca 41309255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27541389 - 27541435
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  27541389 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 27541435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 33939422 - 33939376
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  33939422 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 33939376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 46624091 - 46624045
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||    
T  46624091 agagttgtgttatttgaacatccatacatgtgataacttttgtgaca 46624045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 13735913 - 13735868
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  13735913 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 13735868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 16969454 - 16969499
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  16969454 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 16969499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 31157564 - 31157609
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgac 175  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  31157564 agagttgtgttatttgaacatccatatatgtgataacttctgtgac 31157609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 32924169 - 32924214
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  32924169 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 32924214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 52939838 - 52939789
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||| ||||||| ||| |||||| ||||||    
T  52939838 tttagagttgtgttatttgaacatccatatatgtgacaactttcgtgaca 52939789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 35597344 - 35597300
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||    
T  35597344 agttgtgttatttgaatattcatatatgtgacaacttttgtgaca 35597300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 55151603 - 55151646
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgt 172  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||    
T  55151603 tagagttgtgttatttgaacatttatatatgtgacaacttttgt 55151646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 42358529 - 42358571
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  42358529 ttgtgttatttgaacatccatatatgtgacaacttttgtgaca 42358571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 52326203 - 52326157
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| ||||||| |||||    
T  52326203 agagttgtgttatttgaacatccatatatatgacaacttttatgaca 52326157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 7934157 - 7934112
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| || ||||||||||    
T  7934157 gagttgtgttatttgaacatccatatatgtgacaatttttgtgaca 7934112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 19149173 - 19149128
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| || ||||||||||    
T  19149173 gagttgtgttatttgaacatccatatatgtgacaatttttgtgaca 19149128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 42356972 - 42357017
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| || ||||||||||    
T  42356972 gagttgtgttatttgaacatccatatatgtgacaatttttgtgaca 42357017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 42478143 - 42478095
Alignment:
Q  130 agagttgtgttatttgaacattc--atatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |  |||||| |||||||||||||||||    
T  42478143 agagttgtgttatttgaacatccatatatatatgataacttttgtgaca 42478095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 44413283 - 44413328
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||  |||||| ||| |||||||||||||    
T  44413283 gagttgtgttatttgaacatctatatatgtgacaacttttgtgaca 44413328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 8852 - 8806
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  8852 agagttgtgttatttgaacatccatatatctgacaacttttatgaca 8806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 76506 - 76552
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  76506 agagttgtgttattttaacatccatatatgtgacaacttttgtgaca 76552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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