View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_257 (Length: 247)
Name: NF0154_2D_low_257
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_257 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 41939497 - 41939727
Alignment:
| Q |
1 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41939497 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
41939596 |
T |
|
| Q |
101 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41939597 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttat |
41939696 |
T |
|
| Q |
201 |
ggaattgacgaatgtcttgatcaagatgatg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
41939697 |
ggaattgacgaatgtcttgatcaagatgatg |
41939727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 36259982 - 36259816
Alignment:
| Q |
1 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||||| || ||||| |||| ||||||||||| || | |||||| ||||||||||| || ||||| |
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| T |
36259982 |
aaactcattacaaaagaaagcatggaacaaagccatttatctgcagaaaatgttctaaagcatttgctgttaaaggtgattggagaactcatgaaaaaaa |
36259883 |
T |
|
| Q |
101 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcat |
167 |
Q |
| |
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|||||| || |||||||||| |||||| || |||||||| ||||||||||| |||||||||||| |
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| T |
36259882 |
ctgtggaaagttttggtattgcacttgtggttcggattttaaacacaaaagatctcttaaagatcat |
36259816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 36570008 - 36570198
Alignment:
| Q |
1 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| || |||| || ||||| || ||||| || ||||||||||| || || || |
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| T |
36570008 |
aaacacattacaagagaaaacatggaattaagccattcatgtgtagaaaatgcagcaaggcttttgctgttagaggagattggagaactcatgaaaagaa |
36570107 |
T |
|
| Q |
101 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacat |
191 |
Q |
| |
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||||| || |||||||||||| ||||| || |||||||| ||||| || || ||||||||||||||||| |||||||||| ||||||| |
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| T |
36570108 |
ttgtggaaagctttggtattgtatctgtggttctgattttaaacacaagaggtctcttaaagatcatatcaaagcttttggaagtggacat |
36570198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 22296001 - 22295835
Alignment:
| Q |
1 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
100 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||| ||||||||||||| | ||| |||||||||| ||||||||||||||||| || |||||||| |
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| T |
22296001 |
aaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaa |
22295902 |
T |
|
| Q |
101 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcat |
167 |
Q |
| |
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|||||| || ||||||| |||| ||||| || ||||| || ||||| ||||| |||||||||||| |
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| T |
22295901 |
ctgtggaaagctttggttttgtatctgtggatctgatttcaaacacaagagatctcttaaagatcat |
22295835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13516858 - 13516690
Alignment:
| Q |
1 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || | |||||||||||| ||| ||||| |||||||||| | |||||| |||||||| || ||||| || |
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| T |
13516858 |
aaacacattataagagaaagcatggtataaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaa |
13516759 |
T |
|
| Q |
101 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatat |
169 |
Q |
| |
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||||| ||| | |||||||||| ||||| || |||||||| || ||||| || |||||||| ||||| |
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| T |
13516758 |
ttgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatat |
13516690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13606391 - 13606223
Alignment:
| Q |
1 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || | |||||||||||| ||| ||||| |||||||||| | |||||| |||||||| || ||||| || |
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|
| T |
13606391 |
aaacacattataagagaaagcatggtataaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaa |
13606292 |
T |
|
| Q |
101 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatat |
169 |
Q |
| |
|
||||| ||| | |||||||||| ||||| || |||||||| || ||||| || |||||||| ||||| |
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|
| T |
13606291 |
ttgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatat |
13606223 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 21035772 - 21035565
Alignment:
| Q |
1 |
aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa |
100 |
Q |
| |
|
|||||||||| || || || ||||| || ||||| |||||||||||||| ||| | || || ||||| || ||||| || ||||||||||| ||||| || |
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|
| T |
21035772 |
aaacacattataaaaggaaacatgggattaagccttttatgtgtagaaaatgtggtaaggcttttgctgttagaggagattggagaactcatgagaagaa |
21035673 |
T |
|
| Q |
101 |
ctgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttat |
200 |
Q |
| |
|
||||| || |||||||||||| |||||| || ||||||||||| || |||| |||||||||||||| | |||||||| | ||| ||| |||||| |
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|
| T |
21035672 |
ttgtggaaagctttggtattgtctttgtggttcggattttaagcataagcgatcgcttaaagatcatataagagcttttgggagtggtcatgctgcttat |
21035573 |
T |
|
| Q |
201 |
ggaattga |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
21035572 |
ggaattga |
21035565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 19333454 - 19333614
Alignment:
| Q |
9 |
tacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaactgtggga |
108 |
Q |
| |
|
||||| ||||| ||||| | ||| ||||||||||||||||| ||| | ||| ||||||| || | |||||| ||||| ||||| || || || ||||| | |
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|
| T |
19333454 |
tacaaaagaaaacatgggacaaaaccatttatgtgtagaaaatgtgggaaaacatttgctgtcaaaggtgattggaggactcatgaaaagaattgtggca |
19333553 |
T |
|
| Q |
109 |
aactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatat |
169 |
Q |
| |
|
| | |||||||| |||||| || |||||||| ||||||||||| || ||||||||||| |
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|
| T |
19333554 |
agttatggtattgcacttgtggttcagattttaaacacaaaagatctctcaaagatcatat |
19333614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 39300566 - 39300687
Alignment:
| Q |
61 |
catttgcagtaagaggtgactggagaactcacgagaaaaactgtgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaa |
160 |
Q |
| |
|
|||| ||||| | |||||| ||||||||||| |||||||||||||| || | |||| |||| ||||| || ||||| || ||||| || |||||||| |
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|
| T |
39300566 |
cattggcagtgaaaggtgattggagaactcatgagaaaaactgtggcaagcgttggctttgtatctgtggatcagatttcaaacacaagaggtcacttaa |
39300665 |
T |
|
| Q |
161 |
agatcatatcaaggcttttgga |
182 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
39300666 |
ggatcatatcaaagcatttgga |
39300687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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