View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_262 (Length: 244)
Name: NF0154_2D_low_262
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_262 |
 | |
|
| [»] chr3 (10 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 27005670 - 27005438
Alignment:
| Q |
12 |
gatggacatcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcac |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005670 |
gatgcacatcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcac |
27005571 |
T |
|
| Q |
112 |
ttgattgtatacaaaatccaaatccaaatccactgacagactttttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaagg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005570 |
ttgattgtatacaaaatccaaatccaaatccactgacagactttttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaagg |
27005471 |
T |
|
| Q |
212 |
ggtgcaaagaaggctgagttggtgagctggtga |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27005470 |
agtgcaaagaaggctgagttggtgagctggtga |
27005438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 36810912 - 36810690
Alignment:
| Q |
23 |
agaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgtata |
122 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || || ||||| |||| ||||||| ||| | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
36810912 |
agaagttgcatgttagggaacatgaaagcaaacatcttgatgtcttcttcttgcaaacgtaaatttttagccaaatggagagacttcacttgatggtata |
36810813 |
T |
|
| Q |
123 |
caaaatccaaatccaaatccactgacagactt------tttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggggtgc |
216 |
Q |
| |
|
| | | ||||||||||||||||| | || ||||| |||| || |||||||||||||||||| | ||||||| || ||||||||||| |||| |
|
|
| T |
36810812 |
cta---ctgaatccaaatccactgacggttttgagccatttcctatatttgttgactccattctgatctcagcgagcaaatgaaagttcctaaggagtgc |
36810716 |
T |
|
| Q |
217 |
aaagaaggctgagttggtgagctggt |
242 |
Q |
| |
|
|||||||| ||| | ||||||||||| |
|
|
| T |
36810715 |
aaagaaggatgaataggtgagctggt |
36810690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 33708776 - 33708694
Alignment:
| Q |
157 |
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggggtgcaaagaaggctgagttggtgagct |
239 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
33708776 |
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtgagct |
33708694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 33714611 - 33714531
Alignment:
| Q |
157 |
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggggtgcaaagaaggctgagttggtgag |
237 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
33714611 |
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtgag |
33714531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 36875776 - 36875882
Alignment:
| Q |
19 |
atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg |
118 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||||||||| || |||||||||| |||| ||| ||||| |||||||| ||||||||||| ||||| | |
|
|
| T |
36875776 |
atcaagaagttgcatgttaggaaacgtaaaagcaaacatgttgatgtcttcatcttgcaaatgtgaattgttagccaaatggagagacttcagttgatgg |
36875875 |
T |
|
| Q |
119 |
tatacaa |
125 |
Q |
| |
|
||||||| |
|
|
| T |
36875876 |
tatacaa |
36875882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 33396713 - 33396819
Alignment:
| Q |
19 |
atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg |
118 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||| ||||||| | || |||||||||| ||| ||| ||||| |||||||| ||||||||||||||||| | |
|
|
| T |
33396713 |
atcaagaagctgcatattaggaaacataaaagaaaacatggtgatgtcttcatcttgcaattgtgaattgtaagccaaatggagagacttcacttgatgg |
33396812 |
T |
|
| Q |
119 |
tatacaa |
125 |
Q |
| |
|
||||||| |
|
|
| T |
33396813 |
tatacaa |
33396819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 37580714 - 37580608
Alignment:
| Q |
19 |
atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg |
118 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||||| || ||||||||| ||||| || |||| |||||||| ||||||||||||||||| | |
|
|
| T |
37580714 |
atcaagaagttgcatattaggaaacaggaaagcaaacatgtggatgtcttcatctcgcaaacatgaattggaagccaaatggagagacttcacttgatgg |
37580615 |
T |
|
| Q |
119 |
tatacaa |
125 |
Q |
| |
|
||||||| |
|
|
| T |
37580614 |
tatacaa |
37580608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 33708911 - 33708805
Alignment:
| Q |
19 |
atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg |
118 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | || || | || ||||| |||| || ||||| |||||||| ||||||||||||||||| | |
|
|
| T |
33708911 |
atcaagaagttgcatattaggaaacattaaagcaaatcttttgatgtgtttatcttgtaaacctgaattgtgagccaaatggagagacttcacttgatgg |
33708812 |
T |
|
| Q |
119 |
tatacaa |
125 |
Q |
| |
|
||||||| |
|
|
| T |
33708811 |
tatacaa |
33708805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 37580581 - 37580498
Alignment:
| Q |
155 |
tttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggggtgcaaagaaggctgagttggtgagc |
238 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||| ||||| |||||||||||| ||||| ||||||| ||||| | ||||||||| |
|
|
| T |
37580581 |
tttccaattcctgttgactccattttgatctcagtgagtaaaggacagttcttaaggagtgcaaacaaggcaaaattggtgagc |
37580498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 33714746 - 33714640
Alignment:
| Q |
19 |
atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg |
118 |
Q |
| |
|
|||||||| |||||| | || ||||||||||||||| | || || | |||||||| ||||| || ||||| |||||||| |||||||||||| |||| | |
|
|
| T |
33714746 |
atcaagaaattgcatacttggaaacattaaagcaaaccttttgatgtgttcatcttgcaaacctgaattgtgagccaaatggagagacttcacctgatgg |
33714647 |
T |
|
| Q |
119 |
tatacaa |
125 |
Q |
| |
|
||| ||| |
|
|
| T |
33714646 |
tattcaa |
33714640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 52093039 - 52093097
Alignment:
| Q |
67 |
ttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgtatacaa |
125 |
Q |
| |
|
||||| |||||| ||||||||| | ||||||| |||||||||||||||| |||||||| |
|
|
| T |
52093039 |
ttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaa |
52093097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1646 times since January 2019
Visitors: 2194