View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_263 (Length: 244)
Name: NF0154_2D_low_263
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_263 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 38751068 - 38751294
Alignment:
| Q |
18 |
atcaagtaatggaaaatctgaaagaaataactaagtcaaaatctaaatatcagcctcagctatacatgaaaagatggttatcttcaaatgccaacaaaaa |
117 |
Q |
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| T |
38751068 |
atcaagtaatggaaaatctgaaagaaataactaagtcaaaatctaaatatcagcctcagctatacatgaaaagatggttatcttcaaatgccaacaaaaa |
38751167 |
T |
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| Q |
118 |
acaatcaaagcaatccattacagactttaacattatcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggatgaaccctc |
217 |
Q |
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| T |
38751168 |
acaatcaaagcaatccattacagactttaacattatcatggaaagctctgaacataaaactaattattcttattaatcaagattactaggatgaaccctc |
38751267 |
T |
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| Q |
218 |
ttttttccacaaagaggaacaccaaag |
244 |
Q |
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| T |
38751268 |
ttttttccacaaagaggaacaccaaag |
38751294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 3021318 - 3021156
Alignment:
| Q |
81 |
acatgaaaagatggttatcttcaaatgccaacaaaaaacaatcaaagcaatccattacagactttaacattatcatggaaagctctgaacataaaactaa |
180 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021318 |
acatgaaaagatggttctcttcaaatgccaacaaaaaacaatcaaagaaatccattacagactttaacattatcatggaaagctctgaacataaaactaa |
3021219 |
T |
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| Q |
181 |
ttattcttattaatcaagattactaggatgaaccctcttttttccacaaagaggaacaccaaa |
243 |
Q |
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| T |
3021218 |
ttattcttattaatcaagattactaggatgaaccctcttttttccacaaagaggaacaccaaa |
3021156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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