View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_269 (Length: 240)
Name: NF0154_2D_low_269
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_269 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 5788693 - 5788904
Alignment:
| Q |
7 |
aagaatagcaagatatactacctagaatcctgtcacatacaaacaaaagacacgcattacacgaggcacacaaaaccaaaccaccaccatataaagtgta |
106 |
Q |
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| T |
5788693 |
aagagtagcaagatatactacctagaatcctgtcacatacaaacaaaagacacgcattacacgaggcacacaaaaccaaaccaccaccatataaagtgta |
5788792 |
T |
|
| Q |
107 |
actaaaaggatatagcagccaactatagtagcatcatatgaagggaatatagcagcaaactataatagcattctataaagatggaatacttaaaaaatac |
206 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |
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| T |
5788793 |
actaaaaggatatagcagccaactatagtag---catatgaagggaatatagcagcaaactataatagcattctatgaagctggaatacttaaataatac |
5788889 |
T |
|
| Q |
207 |
aaatttaaccgtatc |
221 |
Q |
| |
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||||||||||||||| |
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| T |
5788890 |
aaatttaaccgtatc |
5788904 |
T |
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