View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_27 (Length: 728)
Name: NF0154_2D_low_27
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 36 - 687
Target Start/End: Original strand, 46502534 - 46503185
Alignment:
| Q |
36 |
cgacaatcccgagaagcgtgatccaaatgatgagatcttatggcagatatatgacctaagaagcaactgttggagggatcttcaagtagaaatgccaagt |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46502534 |
cgacaatcccgagaagcgtgatccaaatgatgagatcttatggcagatatatgacctaagaagcaactgttggagggatcttcaagtagaaatgccaagt |
46502633 |
T |
|
| Q |
136 |
catctttggactaacatgtggcaagagactggttatgcggtgtacttgcaagggatgtgccactggtggggctatgaagattattttggggatgaggtgt |
235 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46502634 |
catctttggactgacatgtggcaagagactggttatgcggtgtacttgcaagggatgtgccactggtggggctatgaagattattttggggatgaggtgt |
46502733 |
T |
|
| Q |
236 |
tggtatcatttaacctgagtaatgaggtcttcattacaacacccttcaaccataattatggtagatttgctaaacacatggtggtgttgaaagagtccat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46502734 |
tggtatcatttaacctgagtaatgaggtcttcattacaacacccttcaaccataattatggtagatttgctaaacacatggtggtgttgaaagagtccat |
46502833 |
T |
|
| Q |
336 |
tgctatgatcgagtatcaagattcttcttgtctttacatatcaattttgggtgaatttggtgtggcggattcatggacgagactttttaaaattggaccc |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46502834 |
tgctatgatcgagtatcaagattcttcttgtctttacatatcaattttgggtgaatttggtgtggcggattcatggacgagacttttgaaaattggaccc |
46502933 |
T |
|
| Q |
436 |
ctacccggtgtgttggaacctattggagttggaaagaatggcgatatattctacataaattatgatgaagaagttgcaaggtttgatttaaatgctgaag |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46502934 |
ctacccggtgtgttggaacctattggagttggaaagaatggcgatatattctacataaattatgatgaagaagttgcaaggtttgatttaaatgctgaag |
46503033 |
T |
|
| Q |
536 |
tgattgaagatatgggggttaatggaaggcatagatgtagtcaaatgagtatttataatgaaagtcttcttccaattggaggaatgcgtggttgattgtt |
635 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46503034 |
tgattgaagatatgggggttaatggaaggcatagatgtagtcaaatggttatttataatgaaagtcttcttccaattggaggaatgcgtggttgattgtt |
46503133 |
T |
|
| Q |
636 |
ttccttagcatgcataacaggttacggttattagaaatggattagggtgtta |
687 |
Q |
| |
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||||||||||||||| | |||||| |||||||||||||||||||| |||||| |
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|
| T |
46503134 |
ttccttagcatgcattagaggttatggttattagaaatggattagtgtgtta |
46503185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 54 - 646
Target Start/End: Complemental strand, 4041647 - 4041052
Alignment:
| Q |
54 |
tgatccaaatgatgagatct-tatggcagatatatgacctaagaagcaactgttggagggatcttcaagtagaaatgccaagtcatctttggactaacat |
152 |
Q |
| |
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|||||||| ||||||| ||| |||||||||||||| ||||| ||| ||| |||||||||||||| |||| |||||||||| |||| ||||||| || |
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| T |
4041647 |
tgatccaagtgatgag-tctgtatggcagatatatagcctaaaaagtaacagttggagggatcttgaagttgaaatgccaaatcatacttggactgacca |
4041549 |
T |
|
| Q |
153 |
gtggcaagagactggttatgcggtgtacttgcaagggatgtgccactggtggggctatgaagattattttggggatgaggtgttggtatcatttaacctg |
252 |
Q |
| |
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||||||| | | ||| | ||||||| | |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| || |
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| T |
4041548 |
gtggcaaaacgccggtaaatcggtgtattgccaagggatgtgccattggtggggatatgaagattacgacggggatgaggtgttggtatcatttaacttg |
4041449 |
T |
|
| Q |
253 |
agtaatgaggtcttcattacaacacccttcaaccataattatggtagatttgctaaacacatggtggtgttgaaagagtccattgctatgatcgagtatc |
352 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
4041448 |
agtgatgaggtcttcattacaacacccttcaactataattggggtagattttttaaacatatggtggtgttgaaagagttcattgctatgattgagtatg |
4041349 |
T |
|
| Q |
353 |
aa---gattcttcttgtctttacatatcaattttgggtgaatttggtgtggcggattcatggacgagactttttaaaattggacccctacccggtgtgtt |
449 |
Q |
| |
|
|| ||| | | || | ||| ||||||||||||||||||| ||||||| ||||| || ||||| || ||||||||||| |||||| || || ||| |
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|
| T |
4041348 |
aagacgatccattttattttttcatatcaattttgggtgaaattggtgtcgcggaatcttggacaaggctttttaaaatcggacccttatatggcgtgga |
4041249 |
T |
|
| Q |
450 |
ggaacctattggagttggaaagaatggcgatatattctacataaattatgatgaagaagttgcaaggtttgatttaaatgctgaagtgattgaagatatg |
549 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| || | || |||||||||||||||||||| |||||| |||| |||||||||||||| |
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|
| T |
4041248 |
agaacctattggagttggaaagaatgctgatatattttacatgaagaaggacgaagaagttgcaaggtttgacttaaatactgaggtgattgaagatatt |
4041149 |
T |
|
| Q |
550 |
ggggttaatggaaggcatagatgtagtcaaatgagtatttataatgaaagtcttcttccaattggaggaatgcgtggttgattgttttccttagcat |
646 |
Q |
| |
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||||||| |||||| ||| |||| |||| | | ||||||||||||||| ||||||||||||| |||||||| ||||||||| ||||| ||||||| |
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|
| T |
4041148 |
agggttaaaggaaggtataaatgttgtcagacggttatttataatgaaagccttcttccaattgaaggaatgcatggttgattattttcattagcat |
4041052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 105 - 424
Target Start/End: Complemental strand, 40843516 - 40843191
Alignment:
| Q |
105 |
ttggagggatcttcaagtagaaatgccaagtcatctttggactaacatgtggcaagagactggttatgcggtgtacttgcaagggatgtgccactggtgg |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| || | || ||||||||| || |||||||| || || | || |||||||| || |||||| |
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|
| T |
40843516 |
ttggagggatcttcaagttgaaatgccaaatcattcacggtatgacgggtggcaagacaccggttatgcagtacaccttcatgggatgtgtcattggtgg |
40843417 |
T |
|
| Q |
205 |
ggctatgaagattattttggggatgaggtgttggtatcatttaacctgagtaatgaggtcttcattacaacacccttc------aaccataattatggta |
298 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||||||||| ||||| | || | |||| ||| |||||||||| | ||| ||| ||| || |
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|
| T |
40843416 |
ggctacgaagattattttggggaacagatgttggtatcatttaacttgagtgacgatgacttcgttaaaacacccttccccttgagccaaaataatgtta |
40843317 |
T |
|
| Q |
299 |
gatttgctaaacacatggtggtgttgaaagagtccattgctatgatcgagtatcaagattcttcttgtctttacatatcaattttgggtgaatttggtgt |
398 |
Q |
| |
|
|||| |||||||| | || ||||||||||| ||||||||||||||||||||| | || || ||| | | ||||||||||||||||||||||||||| |
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|
| T |
40843316 |
aatttcctaaacactttgttgtgttgaaagaatccattgctatgatcgagtatggacatcctatatgtttcttcatatcaattttgggtgaatttggtgt |
40843217 |
T |
|
| Q |
399 |
ggcggattcatggacgagacttttta |
424 |
Q |
| |
|
||| || ||||||||||| ||||||| |
|
|
| T |
40843216 |
ggcagaatcatggacgaggcttttta |
40843191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 153 - 353
Target Start/End: Complemental strand, 40847793 - 40847593
Alignment:
| Q |
153 |
gtggcaagagactggttatgcggtgtacttgcaagggatgtgccactggtggggctatgaagattattttggggatgaggtgttggtatcatttaacctg |
252 |
Q |
| |
|
||||||||| || |||||||| || ||||| || || ||||| || | |||||||| |||||||||||||||| | |||||||||||||| ||| || |
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|
| T |
40847793 |
gtggcaagacaccggttatgcagtttactttcatggaatgtgtcattcgtggggcttcgaagattattttggggtacatgtgttggtatcatt-aacttg |
40847695 |
T |
|
| Q |
253 |
agtaatgaggtcttcattacaacaccc-ttcaaccataattatggtagatttgctaaacacatggtggtgttgaaagagtccattgctatgatcgagtat |
351 |
Q |
| |
|
||| | |||| |||| ||| ||||||| || | ||| ||||||| || |||| ||||||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
40847694 |
agtgacgaggacttcgttaaaacaccccttgagccaaaattatgataaattttataaacacttggtggtgttgaaagaatccattgctacgatcgagtat |
40847595 |
T |
|
| Q |
352 |
ca |
353 |
Q |
| |
|
|| |
|
|
| T |
40847594 |
ca |
40847593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 373 - 485
Target Start/End: Complemental strand, 40847410 - 40847298
Alignment:
| Q |
373 |
atatcaattttgggtgaatttggtgtggcggattcatggacgagactttttaaaattggacccctacccggtgtgttggaacctattggagttggaaaga |
472 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| |||| | |||| ||| ||||| | ||| |||||||||||||||||| |||| |
|
|
| T |
40847410 |
atatcaattttgggtgaatttggtgtggcagactcatggacgaggctttatggcattgaacctctaccagaagtggtggaacctattggagttgtgaaga |
40847311 |
T |
|
| Q |
473 |
atggcgatatatt |
485 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
40847310 |
atagggatatatt |
40847298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 616
Target Start/End: Complemental strand, 40847244 - 40847198
Alignment:
| Q |
570 |
atgtagtcaaatgagtatttataatgaaagtcttcttccaattggag |
616 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
40847244 |
atgttgtcaaatggttatttataatgaaagtcttcttccaatcggag |
40847198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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