View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_274 (Length: 233)
Name: NF0154_2D_low_274
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_274 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 8358502 - 8358715
Alignment:
| Q |
20 |
tcaaataactatactaaaaacaatataaacaaatatttatgtttacccacatttggaaacaaaagtgaagcaatggaagagctatatgaagagttatgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8358502 |
tcaaataactatactaaaaacaatataaacaaatatttatgtttacccacatttggaaacaaaagtgaagcaatggaagagctatatgaagagttatgaa |
8358601 |
T |
|
| Q |
120 |
tagtgcaaacaaacaatgaatttttcgctgtataaagcatttcttgtttataaattagaaagtaacgcaaaattaacaattttttgatcattcggtatga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8358602 |
tagtgcaaacaaacaatgaatttttcgctgtataaagcatttcttgtttataaattagaaagtaacgcaaaattaacaactttttgatcattcggtatga |
8358701 |
T |
|
| Q |
220 |
atgaagtaaccacc |
233 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8358702 |
atgaagtaaccacc |
8358715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 8367764 - 8367993
Alignment:
| Q |
20 |
tcaaataactatactaaaaacaatataaacaa---atatttatgtttacccacatttgga-aacaaaagtgaagcaatgga------------agagcta |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | || ||||||||||||||| | ||||||| |
|
|
| T |
8367764 |
tcaaataactatactaaaaacaatataaacaataaatatttatgtttaccaacatttgaagaaaaaaagtgaagcaatgaatatgttcattaaagagcta |
8367863 |
T |
|
| Q |
104 |
tatgaagagttatgaatagtgcaaacaaacaatgaatttttcgctgtataaagcatttcttgtttataaattagaaagtaacgcaaaattaacaattttt |
203 |
Q |
| |
|
|| ||||||||| || ||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| |||||||||||| | || |
|
|
| T |
8367864 |
tacaaagagttataaacagtacaaacaaacaatgaatttttcgttgtataaagcatttttcgtttataaattagaaaagaacacaaaattaacaactctt |
8367963 |
T |
|
| Q |
204 |
tgatcattcggtatgaatgaagtaaccacc |
233 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |
|
|
| T |
8367964 |
ttatcattcggtatgaatgaaataaccacc |
8367993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 8420976 - 8420904
Alignment:
| Q |
20 |
tcaaataactatactaaaaacaatataaacaaatatttatgtttacccacatttggaaacaaaagtgaagcaatgga |
96 |
Q |
| |
|
|||||||||||| ||||||| |||||||| || ||||||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
8420976 |
tcaaataactatcctaaaaataatataaataa----ttatgtttaccatcatttgaaaacaaaagttaagcaatgga |
8420904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1764 times since January 2019
Visitors: 2197