View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_280 (Length: 230)
Name: NF0154_2D_low_280
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_280 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 31837339 - 31837138
Alignment:
| Q |
24 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggttcaag |
123 |
Q |
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| T |
31837339 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtataccaggttcaag |
31837240 |
T |
|
| Q |
124 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattgccaac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837239 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattgccaac |
31837140 |
T |
|
| Q |
224 |
ac |
225 |
Q |
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|| |
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| T |
31837139 |
ac |
31837138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 31841372 - 31841182
Alignment:
| Q |
24 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggttcaag |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
31841372 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaat----accaggttcaag |
31841277 |
T |
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| Q |
124 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841276 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31841182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 38040897 - 38040798
Alignment:
| Q |
119 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
38040897 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
38040798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 38040957 - 38040895
Alignment:
| Q |
24 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatca |
87 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
38040957 |
taaacatgaactacaaccaaatgctagct-aattaaaacacagaccaacagagaaagtttatca |
38040895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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