View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_282 (Length: 227)
Name: NF0154_2D_low_282
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_282 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 41939521 - 41939315
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41939521 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
41939422 |
T |
|
| Q |
101 |
aacatgggagtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatctatatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41939421 |
aacatgggagtcttagcatggctgttggttgtgttcctcttagagattctggtccctttctatattgtgatccatgtccccacatatgcatctatatatt |
41939322 |
T |
|
| Q |
201 |
ttggaag |
207 |
Q |
| |
|
||||||| |
|
|
| T |
41939321 |
ttggaag |
41939315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 36259958 - 36260150
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||| ||||| |||| |||||||||||||||||||| |||||||||||||| || | |||||||||| |
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|
| T |
36259958 |
ccatgctttcttttgtaatgagtttggagagttctgaaatccttcaatggttttgctcttggatgattgatgttgttcttgcaaccgtgagcacaacaat |
36260057 |
T |
|
| Q |
101 |
aacatgggagtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct |
193 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||| | || || || ||||| || ||| ||| ||||||||| |||||||||||||||| |
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|
| T |
36260058 |
aacatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgcatct |
36260150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 36570032 - 36569837
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||| || ||||||||||| | |
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|
| T |
36570032 |
ccatgttttctcttgtaatgtgtttgaagtgttctaaaatctttgagaggctttgctcttggatgatcaatgttgtttctgcaccctggtgcacaacagt |
36569933 |
T |
|
| Q |
101 |
aacatgggagtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatctata |
196 |
Q |
| |
|
|||| || || |||||||| ||||||||||||| ||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||| |
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|
| T |
36569932 |
aacaaggtagccttagcattcctgttggttgtgtacctcttagagattcaggaccttttctgtactgtgatccatgcccccacatatgcatctata |
36569837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 13516834 - 13517026
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||| |||||| || ||||||||||||| |
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|
| T |
13516834 |
ccatgctttctcttataatgtgtttgaagagttctaaaatctttgagaggctttgctctaggatggtcaatgttgtgcttgcaacctggtgcacaacaat |
13516933 |
T |
|
| Q |
101 |
aacatgggagtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct |
193 |
Q |
| |
|
| ||||| || |||||||| ||||||||||||| |||| ||||||| || || |||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
13516934 |
agcatggtagccttagcattgctgttggttgtgatccttttagagaatctggcccctttctgtattgagatccatgtccccacatatgcatct |
13517026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 13606367 - 13606559
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||| |||||| || ||||||||||||| |
|
|
| T |
13606367 |
ccatgctttctcttataatgtgtttgaagagttctaaaatctttgagaggctttgctctaggatggtcaatgttgtgcttgcaacctggtgcacaacaat |
13606466 |
T |
|
| Q |
101 |
aacatgggagtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct |
193 |
Q |
| |
|
| ||||| || |||||||| ||||||||||||| |||| ||||||| || || |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
13606467 |
agcatggtagccttagcattgctgttggttgtgatccttttagagaatctggcccctttctgtattgagatccatgtccccacatatgcatct |
13606559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 21035763 - 21035940
Alignment:
| Q |
16 |
taatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaataacatgggagtctta |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||| || |||| ||||||||| || || || |||| |
|
|
| T |
21035763 |
taatgtgtttgaagtgttctgaaatctttcaatggctttgctcttgggtgatcaatgttgttcctgcaacctggtgaacaacaatagcaaggaagcctta |
21035862 |
T |
|
| Q |
116 |
gcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct |
193 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21035863 |
gcatacctgttggttgtgtacctcttagagattctggtccttttctgtattgtgatccatgtccccacatatgcatct |
21035940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 41939955 - 41939895
Alignment:
| Q |
4 |
tgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggat |
64 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
41939955 |
tgctttctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggat |
41939895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 41939810 - 41939756
Alignment:
| Q |
140 |
ttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatcta |
194 |
Q |
| |
|
||||||| || ||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
41939810 |
ttagagactccggtcctttcctatattgagatccatgtccccacatatgcatcta |
41939756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 22295977 - 22296172
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| || ||||| ||| |||||||| || ||||||||||||||||| |||||| |||| |
|
|
| T |
22295977 |
ccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgagtggccttgaccttggatgctctatgttgttcttgcatccctctgcacagcaat |
22296076 |
T |
|
| Q |
101 |
aacatgggagtcttagcatggctgt---tggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct |
193 |
Q |
| |
|
| || || ||||||| ||| | || ||||| | ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22296077 |
agcaaggaagtcttaacattgatgaagctggttttactcctcttagagattctggtccttttctgtattgtgatccatgtccccacatatgcatct |
22296172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 26880441 - 26880381
Alignment:
| Q |
19 |
tgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttct |
79 |
Q |
| |
|
||||| || |||||||| ||||| |||| ||| || ||||||||||| ||||||||||||| |
|
|
| T |
26880441 |
tgtgtctgcagtgttctgaaatccttcaatggcttagctcttggatgctcaatgttgttct |
26880381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 19333470 - 19333277
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
||||| ||||| ||||| || ||||| || |||||||| ||||||| || || ||||||||||||| |||||||||||||| || | ||||||| | |
|
|
| T |
19333470 |
ccatgttttcttttgtagtgagtttggagagttctaaagtctttcaaaggcttagctcttggatgattgatgttgttcttgcaaccttgaacacaacagt |
19333371 |
T |
|
| Q |
101 |
aacatgggagtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatcta |
194 |
Q |
| |
|
| ||||| || |||||||| || | ||||||||| |||||||| || || || || || ||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
19333370 |
agcatggtagccttagcattgcagctggttgtgtgcctcttagtgagtctggccctttcctaaattcagatccatgcccccacatatgcatcta |
19333277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39300530 - 39300424
Alignment:
| Q |
1 |
ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat |
100 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||| ||||| |||| ||| || ||||||||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
39300530 |
ccatgcttcctcttgtagtgtgtctgcagtgttctgaaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaat |
39300431 |
T |
|
| Q |
101 |
aacatgg |
107 |
Q |
| |
|
| ||||| |
|
|
| T |
39300430 |
agcatgg |
39300424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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