View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_288 (Length: 224)

Name: NF0154_2D_low_288
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_288
NF0154_2D_low_288
[»] chr1 (9 HSPs)
chr1 (1-205)||(25701023-25701230)
chr1 (43-95)||(16216427-16216478)
chr1 (12-113)||(38746617-38746716)
chr1 (6-86)||(9109315-9109396)
chr1 (43-83)||(13547023-13547064)
chr1 (43-83)||(13548934-13548975)
chr1 (29-86)||(41136010-41136066)
chr1 (11-86)||(25652276-25652351)
chr1 (43-86)||(29136438-29136482)
[»] chr3 (5 HSPs)
chr3 (4-86)||(5270563-5270645)
chr3 (4-86)||(50432539-50432619)
chr3 (5-86)||(1683664-1683746)
chr3 (8-86)||(20937848-20937926)
chr3 (8-86)||(49199364-49199442)
[»] chr5 (5 HSPs)
chr5 (4-86)||(8038390-8038471)
chr5 (1-84)||(316956-317039)
chr5 (8-83)||(10054714-10054789)
chr5 (4-83)||(33905919-33905998)
chr5 (11-80)||(4160796-4160864)
[»] chr8 (7 HSPs)
chr8 (8-86)||(11137217-11137295)
chr8 (43-86)||(3772382-3772426)
chr8 (8-83)||(7624846-7624919)
chr8 (8-82)||(10240318-10240393)
chr8 (43-83)||(40221938-40221979)
chr8 (47-86)||(2999740-2999780)
chr8 (8-83)||(11384178-11384253)
[»] chr2 (7 HSPs)
chr2 (8-98)||(16676408-16676498)
chr2 (9-86)||(30217945-30218022)
chr2 (41-81)||(36282852-36282892)
chr2 (43-81)||(7451314-7451353)
chr2 (8-85)||(34811121-34811197)
chr2 (8-83)||(42261384-42261457)
chr2 (43-83)||(45727122-45727161)
[»] chr7 (7 HSPs)
chr7 (36-87)||(43363395-43363447)
chr7 (22-95)||(14301374-14301446)
chr7 (8-86)||(5116797-5116875)
chr7 (8-83)||(8452099-8452173)
chr7 (21-87)||(22552498-22552563)
chr7 (43-86)||(22328323-22328367)
chr7 (11-86)||(1360075-1360150)
[»] chr4 (13 HSPs)
chr4 (8-83)||(6199766-6199842)
chr4 (8-86)||(3786153-3786231)
chr4 (4-67)||(41961609-41961671)
chr4 (47-85)||(40974970-40975008)
chr4 (8-83)||(12073586-12073661)
chr4 (8-86)||(12119735-12119813)
chr4 (28-86)||(33090071-33090129)
chr4 (6-72)||(6719761-6719826)
chr4 (8-85)||(33990037-33990114)
chr4 (43-83)||(27416899-27416940)
chr4 (11-86)||(32091632-32091706)
chr4 (8-83)||(26699341-26699416)
chr4 (8-83)||(55085341-55085416)
[»] scaffold0197 (1 HSPs)
scaffold0197 (8-83)||(1295-1370)
[»] scaffold0002 (1 HSPs)
scaffold0002 (8-83)||(490219-490292)
[»] chr6 (1 HSPs)
chr6 (6-50)||(11660831-11660874)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 25701023 - 25701230
Alignment:
Q  1 acgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaataaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  25701023 acgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaaccgaaccaaaaaataacaagataaagagagtagagtatagaaaataaac 25701122  T
Q  101 acagcaaggatttt---tctagttcgacataatttgaccagcccaaataaaactctactaacacttttgacacttggagtttgaacgatcccatcgatat 197  Q
    ||||||||||||||   || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25701123 acagcaaggatttttcatccagttcggcataatttgaccagcccaaataaaactctagtaacacttttgacacttggagtttgaacgatcccatcgatat 25701222  T
Q  198 aaggctcc 205  Q
    ||||||||    
T  25701223 aaggctcc 25701230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 16216427 - 16216478
Alignment:
Q  43 aaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 95  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  16216427 aaaccacaatcgaactaaagaataacgagataaagag-gtagagtatataaaa 16216478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 38746617 - 38746716
Alignment:
Q  12 agatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaataaacacagcaaggat 111  Q
    ||||| || ||||||| ||| | |||||| |||| |||||| ||| ||||||| |||||||||||||||||| |||||||| ||  |||||| |||||||    
T  38746617 agatctaaactagcaatcaactgtaaagc-caaatcacaattgaatcaaagaacaacaagataaagagagtatagtatatagaa-caacacaccaaggat 38746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 9109315 - 9109396
Alignment:
Q  6 agatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa--caagataaagagagtagag 86  Q
    ||||||||||| || ||||||||||| | | ||||| || |||||||| |||||||||||||   ||||||||||||||||||    
T  9109315 agatctagatctaagctagcaaccaactgtgaagcataa-ccacaatcaaaccaaagaataaacaaagataaagagagtagag 9109396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 13547023 - 13547064
Alignment:
Q  43 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 83  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13547023 aaaccacaatccaaccaaagaataaacaagataaagagagta 13547064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 13548934 - 13548975
Alignment:
Q  43 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 83  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13548934 aaaccacaatccaaccaaagaataaacaagataaagagagta 13548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 41136066 - 41136010
Alignment:
Q  29 caagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 86  Q
    ||||| ||||||| ||| |||||  ||| |||||||||||||||||||||||||||||    
T  41136066 caagtgtaaagca-aaatcacaactgaatcaaagaataacaagataaagagagtagag 41136010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 25652351 - 25652276
Alignment:
Q  11 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 86  Q
    |||||| ||||||||||| |||| ||||||| ||||||||  | ||||||| ||| ||||| |||||||||||||||    
T  25652351 tagatctaatctagcaactaagtgtaaagca-aaaccacaggcaaaccaaataataaacaaaataaagagagtagag 25652276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 29136482 - 29136438
Alignment:
Q  43 aaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    
T  29136482 aaaccacaatctaaccaaaggataaacaagataaagagagtagag 29136438  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 5270645 - 5270563
Alignment:
Q  4 atagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 86  Q
    ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  5270645 atagatctagatctaatctagcaaccaagtgtaatgca-aaaccacaatcgaaccaaagaataaacatgataaagagagtagag 5270563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 50432539 - 50432619
Alignment:
Q  4 atagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 86  Q
    ||||||||||||| ||||||||||| ||||  |||||| ||||||||||| |||||||| | |||||||||||||||||||||    
T  50432539 atagatctagatccaatctagcaacgaagtggaaagca-aaaccacaatcaaaccaaag-acaacaagataaagagagtagag 50432619  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 1683746 - 1683664
Alignment:
Q  5 tagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat--aacaagataaagagagtagag 86  Q
    |||||||||||| ||||||| |||| ||| ||||  | ||||||||||||||||||| ||   |||||||||||||||||||||    
T  1683746 tagatctagatctaatctagaaacctagtgtaaaata-aaaccacaatcgaaccaaaaaaataaacaagataaagagagtagag 1683664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 20937926 - 20937848
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    ||||||||| ||||||  || ||||| ||||| | ||| ||||||||||||||| ||||| |||||||||||||||||||    
T  20937926 atctagatctaatctattaatcaagtgtaaagta-aaatcacaatcgaaccaaataataaacaagataaagagagtagag 20937848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 49199364 - 49199442
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| |||||||||||||||||||    
T  49199364 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagtagag 49199442  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 8038471 - 8038390
Alignment:
Q  4 atagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 86  Q
    |||||||| |||| |||||||||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||||||||    
T  8038471 atagatcttgatctaatctagcaaccaagtgtaaagaa-aaaccacaatcgaaccaaaaaataataagataaagagagtagag 8038390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 317039 - 316956
Alignment:
Q  1 acgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtag 84  Q
    |||| |||||||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| |||||||||||||    
T  317039 acgacagatctagatcttatctagcaaccaagtgtaaagca-aaaccacaattgaaccaaagaataaacaaaataaagagagtag 316956  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 10054714 - 10054789
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 83  Q
    ||||||||| |||||||||||||||| ||||||| |||  ||||||||| |||| ||| ||||||||||| ||||||    
T  10054714 atctagatctaatctagcaaccaagtgtaaagca-aaattacaatcgaagcaaaaaataaacaagataaaaagagta 10054789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 33905919 - 33905998
Alignment:
Q  4 atagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 83  Q
    ||||||| ||||  |||||||||| ||||| ||||| | |||||||| ||||||||| |||||| ||||||||||||||||    
T  33905919 atagatcaagatttaatctagcaatcaagtgtaaagta-aaaccacattcgaaccaatgaataaacaagataaagagagta 33905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 4160864 - 4160796
Alignment:
Q  11 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagaga 80  Q
    |||||| |||||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| ||||    
T  4160864 tagatctaatcta-caaccaagtgtaaagca-aaaccataatcgaaccaaagaataaacaagataatgaga 4160796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 11137295 - 11137217
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    ||||| ||| |||||||||| ||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||    
T  11137295 atctaaatctaatctagcaatcaagtataaagaa-aaaccacaatcgaaccaatgaataaacaagataaagagagtagag 11137217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 3772426 - 3772382
Alignment:
Q  43 aaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||    
T  3772426 aaaccacaatctaaccaaagaataaacaagataaagagagtagag 3772382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 7624846 - 7624919
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 83  Q
    ||||||||| || |||||||||| || ||||| | |||||||||||||||||||||| || |||| ||||||||||    
T  7624846 atctagatctaa-ctagcaaccatgtgtaaagta-aaaccacaatcgaaccaaagaacaataagacaaagagagta 7624919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 10240393 - 10240318
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa--taacaagataaagagagt 82  Q
    ||||||||| ||||||| ||| || | ||||||| ||||||||||||||||||| ||   |||||||||||||||||    
T  10240393 atctagatctaatctagaaacgaaatgtaaagca-aaaccacaatcgaaccaaaaaaataaacaagataaagagagt 10240318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 40221979 - 40221938
Alignment:
Q  43 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 83  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  40221979 aaaccacaatccaaccaaagaatgaacaagataaagagagta 40221938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 2999740 - 2999780
Alignment:
Q  47 cacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  2999740 cacaatctaaccaaagaataaacaagataaagagagtagag 2999780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 11384253 - 11384178
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 83  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| ||||||||||||||||    
T  11384253 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagta 11384178  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 16676498 - 16676408
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagagtatataaaataa 98  Q
    ||||||||| ||||||||||| |||| |||| || ||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||    
T  16676498 atctagatctaatctagcaacaaagtgtaaatca-aaaccacaatcgaaccaaagaacaaactagataaagaaagtagagtatatagaataa 16676408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 30217945 - 30218022
Alignment:
Q  9 tctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    |||||||| ||||||| |||||||| |||| ||||| |||||||| ||||||||||||| |||||||||||||||||||    
T  30217945 tctagatccaatctagaaaccaagtgtaaaacacaa-ccacaatcaaaccaaagaataaacaagataaagagagtagag 30218022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 36282852 - 36282892
Alignment:
Q  41 acaaaccacaatcgaaccaaagaataacaagataaagagag 81  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  36282852 acaaagcacaatcgaatcaaagaataacaagataaagagag 36282892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 7451353 - 7451314
Alignment:
Q  43 aaaccacaatcgaaccaaagaat-aacaagataaagagag 81  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7451353 aaaccacaatcgaaccaaagaataaacaagataaagagag 7451314  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 34811121 - 34811197
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtaga 85  Q
    ||||||||| ||||||||||| || | ||||| | |||| |||| ||||  |||||| ||||||||||||||||||||    
T  34811121 atctagatctaatctagcaactaattgtaaagta-aaactacaaccgaataaaagaacaacaagataaagagagtaga 34811197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 42261384 - 42261457
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 83  Q
    ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  42261384 atctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 42261457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 45727161 - 45727122
Alignment:
Q  43 aaaccacaatcgaaccaaagaataacaagataaagagagta 83  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  45727161 aaaccacaatccaaccaaagaataa-aagataaagagagta 45727122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 43363395 - 43363447
Alignment:
Q  36 aaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagagt 87  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43363395 aaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagtagagt 43363447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 14301374 - 14301446
Alignment:
Q  22 tagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 95  Q
    ||||||| |||| | ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  14301374 tagcaactaagtgtcaagca-aaatcacaatcaaatcaaagaataacaagataaagagagtagagtatagaaaa 14301446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 5116875 - 5116797
Alignment:
Q  8 atctagatc-gaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 86  Q
    ||||||||| |||||| | |||||||| ||||||| || |||||||||||||| | ||||||||||||||||| ||||||    
T  5116875 atctagatctgaatctcgtaaccaagtgtaaagca-aatccacaatcgaaccatataataacaagataaagagggtagag 5116797  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 8452099 - 8452173
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 83  Q
    ||||||||| ||||||  || ||| | ||||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  8452099 atctagatctaatctaaaaatcaaatgtaaagca-aaaccacaatcgaaccaaagaatgacaagataaaaagagta 8452173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 22552498 - 22552563
Alignment:
Q  21 ctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagt 87  Q
    ||||||||||||| ||||| | ||||| | |||| ||||||||| ||||||||||||||||||||||    
T  22552498 ctagcaaccaagtgtaaagaa-aaacctcgatcgtaccaaagaacaacaagataaagagagtagagt 22552563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 22328323 - 22328367
Alignment:
Q  43 aaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 86  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  22328323 aaaccacaatcgaacaaaagaataaacaagataaagagagtagag 22328367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 1360075 - 1360150
Alignment:
Q  11 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagag 86  Q
    |||||| ||||||  ||| |||| ||||||| ||||||||||||||| ||||||  ||||||||||||||| |||||    
T  1360075 tagatctaatctaaaaactaagtgtaaagca-aaaccacaatcgaacaaaagaagaaacaagataaagagaatagag 1360150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 6199766 - 6199842
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagta 83  Q
    ||||||||| |||||| |||| || |  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6199766 atctagatctaatctaacaactaattgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagta 6199842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 3786231 - 3786153
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 86  Q
    ||||||||| ||| |||||||||||| |||| || |||  |||||||||||||||||| |||||||||||||||||||||    
T  3786231 atctagatctaatatagcaaccaagtgtaaaaca-aaattacaatcgaaccaaagaatgaacaagataaagagagtagag 3786153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 41961671 - 41961609
Alignment:
Q  4 atagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa 67  Q
    ||||||||||||| ||||||| ||||| || ||||||| ||||||||||| |||||||||||||    
T  41961671 atagatctagatctaatctagtaaccaggtttaaagca-aaaccacaatcaaaccaaagaataa 41961609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 40974970 - 40975008
Alignment:
Q  47 cacaatcgaaccaaagaataacaagataaagagagtaga 85  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  40974970 cacaatcgaaccaaagaacaacaagataaagagagtaga 40975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 12073661 - 12073586
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 83  Q
    ||||||||| ||||||| ||||||||  | | || ||||||||||| ||||||||||| ||||||||||||||||||    
T  12073661 atctagatctaatctagaaaccaagtgcataaca-aaaccacaatctaaccaaagaataaacaagataaagagagta 12073586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 12119813 - 12119735
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    ||||||||| ||||||| ||| ||||  | |||| |||||||||||| |||||||| ||| |||||||||||||||||||    
T  12119813 atctagatctaatctagaaactaagtgcatagca-aaaccacaatcggaccaaagactaaacaagataaagagagtagag 12119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 33090129 - 33090071
Alignment:
Q  28 ccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 86  Q
    |||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||    
T  33090129 ccaagtgtaaagca-aaaccacaatcgaaccaaaaaataaacaagataaagagagcagag 33090071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 6719826 - 6719761
Alignment:
Q  6 agatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaaga 72  Q
    ||||||||||| ||||||| ||||||||  |||||| ||||||||||  |||||||||| |||||||    
T  6719826 agatctagatctaatctagaaaccaagtgcaaagca-aaaccacaataaaaccaaagaacaacaaga 6719761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 33990114 - 33990037
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtaga 85  Q
    ||||||||| ||||||| ||||||||  | |||| || ||| ||| |||||||||||||| ||||||||||||||||||    
T  33990114 atctagatctaatctagaaaccaagtgcatagca-aatccagaattgaaccaaagaataaacaagataaagagagtaga 33990037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 27416899 - 27416940
Alignment:
Q  43 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 83  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  27416899 aaaccacaatccaaccaaagaataaacaagataaagagagta 27416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 32091706 - 32091632
Alignment:
Q  11 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 86  Q
    |||||| |||||||||| ||||| ||||| |  ||||||||| |||| ||||||||| |||||||||||| ||||||    
T  32091706 tagatctaatctagcaaacaagtgtaaagaa--aaccacaattgaactaaagaataaacaagataaagagcgtagag 32091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 26699341 - 26699416
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 83  Q
    ||||||||| ||||||| | ||||||  | |||| |||||| ||| |||||||||||||| ||||||||||||||||    
T  26699341 atctagatctaatctagaatccaagtgcatagca-aaaccataattgaaccaaagaataaacaagataaagagagta 26699416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 55085341 - 55085416
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 83  Q
    ||||||||| ||| ||| ||||||||  | |||| ||||||||||| |||||| |||||| ||||||||||||||||    
T  55085341 atctagatctaatttagaaaccaagtgcatagca-aaaccacaatccaaccaaggaataaacaagataaagagagta 55085416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 1295 - 1370
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 83  Q
    ||||||||| ||||||| |||||||| ||||| | ||||||||||| ||||||| ||| || |||||||||||||||    
T  1295 atctagatctaatctagaaaccaagtgtaaagta-aaaccacaatcaaaccaaaaaataaataagataaagagagta 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 490219 - 490292
Alignment:
Q  8 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 83  Q
    ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  490219 atctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 490292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 11660874 - 11660831
Alignment:
Q  6 agatctagatcgaatctagcaaccaagtataaagcacaaaccaca 50  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  11660874 agatctagatctaatctagcaaccaagtgtaaagca-aaaccaca 11660831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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