View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_294 (Length: 222)
Name: NF0154_2D_low_294
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_294 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 39813432 - 39813255
Alignment:
| Q |
22 |
tcacaatcaataaattgtactccacttttgaatgtctggctaaatttatcattctttgtacatatatgtgtgataatgggtcaaattcaatgtaagcaaa |
121 |
Q |
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| T |
39813432 |
tcacaatcaataaattgtactccacttttgaatgtctggctaaatttatcattctttgtacatatatgtgtgataatgggtcaaattcaatgtaagcaaa |
39813333 |
T |
|
| Q |
122 |
taatttgacctcgagagtcctgttcctactttcaaagtaataacacattttaaatctaggaagcttgtcaaaaagagg |
199 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813332 |
taatttgacctcgaaagtcctgttcctgctttcaaagtaataacacattttaaatctaggaagcttgtcaaaaagagg |
39813255 |
T |
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