View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_295 (Length: 222)
Name: NF0154_2D_low_295
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_295 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 19077526 - 19077718
Alignment:
| Q |
12 |
tggttgttcatttgtcgaggtaccaaagggaatagttagaatgagctttaaagtaggaaagttctataaataatggagaatcatttccgataaaatgagt |
111 |
Q |
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| T |
19077526 |
tggttgttcatttgtcgaggtaccaaaggaaatagttagaatgagctttaaagtaggaaagttctataaataatggagaatcctttccgataaaatgagt |
19077625 |
T |
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| Q |
112 |
at-gggaaaattattcaagaacttttccttgtccttgctaagtgtgaattacaaccaatgtgatagaaattcacgtttagattatgactcttt |
203 |
Q |
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| T |
19077626 |
atggggaaaattattcaagaacttttccttgtccttgctaagcgtgaattacaaccaatgtgatagaaattcacgtttagataataactcttt |
19077718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 19079240 - 19079441
Alignment:
| Q |
1 |
atcgtcatatatggttgttcatttgtcgaggtaccaaagggaatagttagaatgagctttaaagtaggaaagttctataaataatggagaatcatttccg |
100 |
Q |
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|||||||||| || |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19079240 |
atcgtcatatttgattgttcatttgttggggtaccaaagggaatagttagaatgagctttaaagtaggaaagttctataaataatggagaatcttttccg |
19079339 |
T |
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| Q |
101 |
ataaaatgagtat-gggaaaattattcaagaacttttccttgtccttgctaagtgtgaattacaaccaatgtgatagaaattcacgtttagattatgact |
199 |
Q |
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||||||||||||| |||||||| ||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19079340 |
ataaaatgagtatggggaaaataattcaagaatttgtgcttgtccttgctaagcgtgaattacaaccaatgtgatagaaattcacgtttagataatgact |
19079439 |
T |
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| Q |
200 |
ct |
201 |
Q |
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|| |
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| T |
19079440 |
ct |
19079441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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