View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_296 (Length: 222)
Name: NF0154_2D_low_296
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_296 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 10152792 - 10152983
Alignment:
| Q |
25 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
124 |
Q |
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| T |
10152792 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattgacagcacttggtgc |
10152891 |
T |
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| Q |
125 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcatatcag |
216 |
Q |
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| T |
10152892 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcatatcag |
10152983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 10141171 - 10141341
Alignment:
| Q |
25 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
124 |
Q |
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| T |
10141171 |
gtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacccatatcatagaggccgaaagattgtaagagagggttaaaagcacttggtgc |
10141270 |
T |
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| Q |
125 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagctt |
195 |
Q |
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| T |
10141271 |
aaggtaaccacttccaggaatggcatctttgttgtttttctttatatctataggaaggtcatgaagagctt |
10141341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 10146183 - 10146360
Alignment:
| Q |
25 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
124 |
Q |
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| T |
10146183 |
gtgtgacattcagttgagagcagaaatcatgcatagcttatgaagcatccatgtcatagaggccgaaagattctaatagtgggtttaaagcacttggtgc |
10146282 |
T |
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| Q |
125 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaac |
202 |
Q |
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| T |
10146283 |
aaagtaaccccttccagaaatgacatctttgttgtttttcttgatatccataggaaggtcatgaagagcttcaacaac |
10146360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 10089535 - 10089721
Alignment:
| Q |
25 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
124 |
Q |
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|||| |||||||||||||||||||| || || | |||||| |||||||| | |||||||||||| | || ||| |||||| |||| | |||||||| | |
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| T |
10089535 |
gtgtagcattcaattgagagcagaaatcttgtatagcttgcgaagaacccatatcatagaggccgacagattctatgagagggttaaaaacacttggtcc |
10089634 |
T |
|
| Q |
125 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcat |
211 |
Q |
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| T |
10089635 |
aaagtaaccacttccaggaatgacatctttattgtttttcttgatatccataggaaggtcgtgaagagctacaacaaccattttcat |
10089721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 11301207 - 11301021
Alignment:
| Q |
25 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
124 |
Q |
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|||| |||||||||||||||||||| | || | ||||||||||||||| | |||||||||||| | || ||| || ||| |||| | || ||||| | |
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| T |
11301207 |
gtgtagcattcaattgagagcagaaatattgtatagcttgtgaagaacccatatcatagaggccaagagattctatgacagggttaaaaacagttggtcc |
11301108 |
T |
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| Q |
125 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcat |
211 |
Q |
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| T |
11301107 |
aaagtaaccacttccaggaatgacatctttattgtttttcttcctatccataggaaggtcatgaagagctataacaactattttcat |
11301021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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