View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_299 (Length: 221)
Name: NF0154_2D_low_299
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_299 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 5179397 - 5179574
Alignment:
| Q |
20 |
taatgatcacttaagttgattttgtctacaaaagctgcatgattttcaagtctgagtgttactgccttgcaatattttcaaactgtcttctgaaatattt |
119 |
Q |
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| T |
5179397 |
taatgatcccttaagttgattttgtctacaaaagctgcaagattttcaagtctgagtgttactgccttgcaatattttcaagctgtcttctgaaatattt |
5179496 |
T |
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| Q |
120 |
ttattttcttccttcatttatttaaaatacgtatctttaacggatgagtagttattgtgctgatttcagttctatggc |
197 |
Q |
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| T |
5179497 |
ttattttcttccttcatttatttaaaatacgtatctttaacagatgagttgttattgtgctgatttcagttctatggc |
5179574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 5185575 - 5185715
Alignment:
| Q |
30 |
ttaagttgattttgtctacaaaagctgcatgattttcaagtc--tgagtgttactgccttgcaatattttcaaactgtcttctgaaatatttttattttc |
127 |
Q |
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| T |
5185575 |
ttaagttgattttttctacaaaagctgcatgatcttcgtatcaatgggcattgctaccttgcaatgttttcaagctgtctactgaaatatttttagtttc |
5185674 |
T |
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| Q |
128 |
ttccttcatttatttaaaatacgtatctttaacggatgagt |
168 |
Q |
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| T |
5185675 |
ttccttcattgatttaaaatttgtatctttaaccgatgagt |
5185715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 6232143 - 6232201
Alignment:
| Q |
84 |
ccttgcaatattttcaaactgtcttctgaaatatttttattttcttccttcatttattt |
142 |
Q |
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| T |
6232143 |
ccttgcaatgttttcaagctgtctactgaaatatttttagtttcttccttcattgattt |
6232201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 29798245 - 29798304
Alignment:
| Q |
109 |
ctgaaatatttttattttcttccttcatttatttaaaatacgtatctttaacggatgagt |
168 |
Q |
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| T |
29798245 |
ctgaaatatttttattttcttgcttcattgatttaaaattagtatcttcaaccgatgagt |
29798304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 5179315 - 5179397
Alignment:
| Q |
78 |
ttactgccttgcaatattttcaaactgtcttctgaaatatttttattttcttccttcatttatttaaaatacgtatctttaac |
160 |
Q |
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| T |
5179315 |
ttactaccttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgatttaaaattcgtatctttaac |
5179397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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