View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_30 (Length: 694)
Name: NF0154_2D_low_30
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 30)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 1 - 681
Target Start/End: Original strand, 5888042 - 5888710
Alignment:
| Q |
1 |
atttgaagcatcttcgtttga-ggtaatgatggactatatggacctccattaactgaaacaccaaatgatgggccgcaaccacaaccagcatgtgagagg |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5888042 |
atttgaagcatcttcgtttgaaggtaatgatggcctatatggacctccattaactgaaacaccaaatgatgggccgcacccacaaccagcatgtgagagg |
5888141 |
T |
|
| Q |
100 |
tttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatgga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888142 |
tttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatgga |
5888241 |
T |
|
| Q |
200 |
gagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaatttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888242 |
gagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaatttt |
5888341 |
T |
|
| Q |
300 |
aaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtactttgtgttagtcctttgtgtgtat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
5888342 |
aaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatattgaagttgta-------------ctttgtgtgtat |
5888428 |
T |
|
| Q |
400 |
taactttcattgagaattgtggtgatagtgtttcattcaaaacagaaatatataagttaatttataactataaacatcataatcaaactggaaacacaaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888429 |
taactttcattgagaattgtggtgatagtgtttcattcaaaacagaaatatataagttaatttataactataaacatcataatcaaactggaaacacaaa |
5888528 |
T |
|
| Q |
500 |
taggatacaactccaaaatctagatatagccaattccttcattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcat |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888529 |
taggatacaactccaaaatctagatatagccaattacttcattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcat |
5888628 |
T |
|
| Q |
600 |
ttgacatacacatggatacaccaaatgatatattactatagtgtttttggtcttatttttaaattagttcatgtgatgtcca |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5888629 |
ttgacatacacatggatacaccaaatgatatattactatagtgtttttggtcttatttttaaattagttcatgtgatttcca |
5888710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 79 - 528
Target Start/End: Original strand, 5896984 - 5897420
Alignment:
| Q |
79 |
ccacaaccagcatgtgagaggtttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccc |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896984 |
ccacaaccagcatgtgagaggtttgcttgttcaattgaacggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccc |
5897083 |
T |
|
| Q |
179 |
tcttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatag |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5897084 |
tcttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatag |
5897183 |
T |
|
| Q |
279 |
aggacagacatacagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtacttt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5897184 |
aggacagacatacagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgta---- |
5897279 |
T |
|
| Q |
379 |
gtgttagtcctttgtgtgtattaactttcattgagaattgtggtgatagtgtttcattcaaaacagaaatatataagttaatttataactataaacatca |
478 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5897280 |
---------ctttgtgtgtattaactttcgttgagaattgtggagatagtgtttcattcaaaacagaaatatataagttaatttataactataaacatca |
5897370 |
T |
|
| Q |
479 |
taatcaaactggaaacacaaataggatacaactccaaaatctagatatag |
528 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
5897371 |
taatcaaactggatacacaaagaggatacaactccaaaatcaagatatag |
5897420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 5563153 - 5562740
Alignment:
| Q |
1 |
atttgaagcatcttcgtttga-ggtaatgatggactatatggacctccattaactgaaacaccaaatgatgggcc---------gcaaccacaaccagca |
90 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
5563153 |
atttgaagcatcttcctttgaaggaaatgatgggctatatggacctccattaactgaaacaccaaatgatgggccagataagccgcacccacaaccagca |
5563054 |
T |
|
| Q |
91 |
tgtgagaggtttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttgga |
190 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
5563053 |
tgtgagagattcgcttgttcaattgactggaattttttaagtgtggaattgggatttgtttttgggctcggaatcatcgttggtcccctcttgttttgga |
5562954 |
T |
|
| Q |
191 |
agaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacata |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5562953 |
agaaatggagagtaagttattggaaactcgtagacaaaattctctgtttgattttccagaggatgcattttgaatatgcaactgatagaggacagacata |
5562854 |
T |
|
| Q |
291 |
cagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtattt--at----atttaagttgtactttgtg-tt |
383 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| | |||||||||| |||| |||||||||||| ||||| || ||||||||||||||||||| || |
|
|
| T |
5562853 |
cagaattttaaggtggtgataacattagtgctaagaattgtgataattattgaaataatgttttctatttccatttccatttaagttgtactttgtgttt |
5562754 |
T |
|
| Q |
384 |
agtcctttgtgtgt |
397 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
5562753 |
actcctttgtgtgt |
5562740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 83 - 397
Target Start/End: Original strand, 5891136 - 5891450
Alignment:
| Q |
83 |
aaccagcatgtgagaggtttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctctt |
182 |
Q |
| |
|
||||||||| ||| ||||| | |||||||||||| |||||||||||||||||||| ||||||||| ||||||| | ||||||||| ||||||||||||| |
|
|
| T |
5891136 |
aaccagcatatgaaaggttaggttgttcaattgattggaattttttaagtgtggagttgggatttgtttttgggttcggaatcatcattggtcccctctt |
5891235 |
T |
|
| Q |
183 |
gttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagagga |
282 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5891236 |
gttt-ggaagaaatggagagtaagttattggaaactcgtagacaagattctctgtttgattttccggaggatgcattttgaatatgtaattgatagagga |
5891334 |
T |
|
| Q |
283 |
cagacatacagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtactttgtg- |
381 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||| |||||||||||| ||||||| ||||||| ||||| |||||||||||| |||||| |
|
|
| T |
5891335 |
aagacatacaaaattttaaggtggtgatagcattagtgctaaggattgtgataaatattaaatcgatgttttctattttcatttaagttgtattttgtgt |
5891434 |
T |
|
| Q |
382 |
ttagtcctttgtgtgt |
397 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
5891435 |
ttactcctttgtgtgt |
5891450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 108 - 383
Target Start/End: Complemental strand, 5611852 - 5611577
Alignment:
| Q |
108 |
ttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagtaagt |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| ||||||| || ||||||||| | ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5611852 |
ttcaattgactggaattttttaagtgtggagttgggatttgtttttgggctcggaatcatcatcggtcctcttttgttttggaagaaatggagagtaagt |
5611753 |
T |
|
| Q |
208 |
tattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaattttaaggtggt |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5611752 |
tattggaaactcgtagacaaaattctctgtttgatttttcggaggatgcattttgaatatgtaactgatagaggacagacatacacaattttaaggtggt |
5611653 |
T |
|
| Q |
308 |
gatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtactttgtgtt |
383 |
Q |
| |
|
||| |||| |||||| ||||||||||| |||| |||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
5611652 |
cataagattagtgctagagattgtgataattatttaaataatgttttcaatttccatttttgttgtactttgtgtt |
5611577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 105 - 397
Target Start/End: Original strand, 5849936 - 5850229
Alignment:
| Q |
105 |
ttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagta |
204 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||||| ||||||| || ||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
5849936 |
ttgttcgattgactggaattttttaagtgtggagttgggatttgtttttgggctcggaattatcatcactcccctcttgttttggaagaaatggagagta |
5850035 |
T |
|
| Q |
205 |
agttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaattttaaggt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5850036 |
agttattggaaactcgtagacaaaattctatgttggatcttccgaagaatgtattttgaatatgcaactgatagaggacagacatacagaattttaaggt |
5850135 |
T |
|
| Q |
305 |
ggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtactttgtg-ttagtcctttgtgtgt |
397 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||| ||||||| ||||||| ||||| |||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
5850136 |
ggtgatagcattagtgctacggattgtgataaatattaaatcgatgttttctattttcatttaagttgtattttgtgtttactcctttgtgtgt |
5850229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 85 - 382
Target Start/End: Complemental strand, 5551506 - 5551209
Alignment:
| Q |
85 |
ccagcatgtgagaggtttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgt |
184 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||| | |||||||||||| |
|
|
| T |
5551506 |
ccagcttgtgaaaggttagcttgttcaattgactggaattttttaagtgtggagttgggatttgtttttgggcttggaatcatcatctgtcccctcttgt |
5551407 |
T |
|
| Q |
185 |
tttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggaca |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||| |||| |||||| |||||||||||| |||||||||| |||| |
|
|
| T |
5551406 |
tttggaagaaatggagagtaagctattggaaactcgcagacaaaattctctgtcggatcttccaaaggatgtattttgaatatgcaactgatagatgaca |
5551307 |
T |
|
| Q |
285 |
gacatacagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtactttgtgt |
382 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| || ||| ||||||||||| |||| | |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5551306 |
gacatacagaactttaaggtggtgataacattattgatagagattgtgataattattgacataatgttttctatttccatttaagttgtactttgtgt |
5551209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 83 - 383
Target Start/End: Original strand, 5854890 - 5855189
Alignment:
| Q |
83 |
aaccagcatgtgagaggtttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctctt |
182 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||| ||||||||||| ||| |||| ||||||||| ||||||| || ||||||||| |||||||| ||| |
|
|
| T |
5854890 |
aaccagcctgtgaaaggttagcttgttcaattgactggaattttttgagtatggagttgggatttgtttttgggctcggaatcatcattggtcccacctt |
5854989 |
T |
|
| Q |
183 |
gttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagagga |
282 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||| |||||| | |||| ||| ||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
5854990 |
gttttggaagcgatggagagtatgttattggaaacgcgtaga-aaaattatctgttggatcttccgaaggatgtattttgaatatgcaactgatagagga |
5855088 |
T |
|
| Q |
283 |
cagacatacagaattttaaggtggtgatagaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtactttgtgt |
382 |
Q |
| |
|
||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
5855089 |
cagacatacagaattttaagggtgtgataacatcagtgctagggattgtgataactattaaaataatgttttgtatgtaaatttaagttgtactttgtgt |
5855188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 79 - 378
Target Start/End: Complemental strand, 5557280 - 5556978
Alignment:
| Q |
79 |
ccacaaccagcatgtgagaggtttgcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccc |
178 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||| ||||||||| ||||||| ||| |||||||| | |||||| | ||||| || || ||||| |
|
|
| T |
5557280 |
ccacaaccagcatgtggaaggcttacttgttcaattgactggaattttataagtgtagaactgggatttgtgtttggattcggaatagtcatttgtccca |
5557181 |
T |
|
| Q |
179 |
tcttgttttggaagaaatggagagtaagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatag |
278 |
Q |
| |
|
| ||||||||||| ||||||| |||| ||||| |||||| || ||||||||||| || | ||| || |||||| || |||||||||| |||||||| |
|
|
| T |
5557180 |
taatgttttggaagcaatggagggtaaattatttgaaacttgtggacaaaattctttgctggatcttttcaaggatgtatcttgaatatgttactgatag |
5557081 |
T |
|
| Q |
279 |
aggacagacatacagaattttaaggtggtgata---gaattaatgctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtac |
375 |
Q |
| |
|
|||||| ||||||| | ||||||||| |||||| |||| ||||| |||||||||||| ||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
5557080 |
aggacaaacatacacagttttaaggttgtgatacttacattagtgctaaggattgtgataattattaaaatgatgttttcaatttccatttaagttgtac |
5556981 |
T |
|
| Q |
376 |
ttt |
378 |
Q |
| |
|
||| |
|
|
| T |
5556980 |
ttt |
5556978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 103 - 383
Target Start/End: Complemental strand, 5603739 - 5603457
Alignment:
| Q |
103 |
gcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagag |
202 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||| || || |||| || ||||||||||| | ||||| | |
|
|
| T |
5603739 |
gcttgttcaattgactggaattttataagtgtggaattgggattcatttttgggcttggaattgtcatttatcccatcatgttttggaagcattggaggg |
5603640 |
T |
|
| Q |
203 |
taagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaattttaag |
302 |
Q |
| |
|
||| ||||||||||| || ||||||| ||| || | ||||||| |||||| || | ||||||||||| || ||||| || ||||||| | ||||||| |
|
|
| T |
5603639 |
taaagtattggaaacttgtggacaaaactctttgctggattttctcaaggatgtatatggaatatgtaaccgacagaggtcaaacatacatagttttaag |
5603540 |
T |
|
| Q |
303 |
gtggtgatagaattaat--gctagggattgtgataactattaaaataatgttttgtatttatatttaagttgtactttgtgtt |
383 |
Q |
| |
|
||||||||| |||| | || || |||||||||| | ||||| |||||||| | |||| ||||| ||||| ||||||||| |
|
|
| T |
5603539 |
gtggtgataacattagtgcgcaagtcattgtgataatttgtaaaacaatgttttctgtttacatttatgttgttctttgtgtt |
5603457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 5856385 - 5856218
Alignment:
| Q |
104 |
cttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagt |
203 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| | |||||||||||||| ||||||| | |||||||| || ||||||||||| ||||||| || |
|
|
| T |
5856385 |
cttgtttaattgattggaattttttaagtgtggaactaggatttatttttgggcttggaagtgttattggtcccatcatgttttggaagcaatggagggt |
5856286 |
T |
|
| Q |
204 |
aagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaa |
271 |
Q |
| |
|
| |||||||||||||| | ||||||||||| || | ||| |||| ||||||||||||||||||||| |
|
|
| T |
5856285 |
aggttattggaaactcatggacaaaattctttgctggatattcccttggatgcattttgaatatgtaa |
5856218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 406 - 499
Target Start/End: Complemental strand, 5551152 - 5551059
Alignment:
| Q |
406 |
tcattgagaattgtggtgatagtgtttcattcaaaacagaaatatataagttaatttataactataaacatcataatcaaactggaaacacaaa |
499 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
5551152 |
tcattgagaattatagtgatagtgtttcattcaaaatagaaatataaaagttgatttataacaataaacatcataatcaaaccggaaacacaaa |
5551059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 5573069 - 5573271
Alignment:
| Q |
104 |
cttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagt |
203 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||||| ||| ||||||| || ||||| || ||||||| || ||||||||||| ||||||| | |
|
|
| T |
5573069 |
cttgttcaacagactggaaatttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctaatgttttggaagcaatggaggat |
5573168 |
T |
|
| Q |
204 |
aagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaattttaagg |
303 |
Q |
| |
|
||| ||||||||||| || || |||||||| || | ||| || ||||| ||| ||||||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
5573169 |
aagatattggaaactagtggataaaattctttgctggatcttttcaaggattcatcttgaatatgtaacccatagaggacagacatacatagttttaagg |
5573268 |
T |
|
| Q |
304 |
tgg |
306 |
Q |
| |
|
||| |
|
|
| T |
5573269 |
tgg |
5573271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 5585276 - 5585478
Alignment:
| Q |
104 |
cttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagt |
203 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||||| ||| ||||||| || ||||| || ||||||| || ||||||||||| ||||||| | |
|
|
| T |
5585276 |
cttgttcaacagactggaaatttttaagtgtagaattggggtttgtttttggtctcggaattgtcattggtcctctaatgttttggaagcaatggaggat |
5585375 |
T |
|
| Q |
204 |
aagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaattttaagg |
303 |
Q |
| |
|
||| ||||||||||| || || |||||||| || | ||| || ||||| ||| ||||||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
5585376 |
aagatattggaaactagtggataaaattctttgctggatcttttcaaggattcatcttgaatatgtaacccatagaggacagacatacatagttttaagg |
5585475 |
T |
|
| Q |
304 |
tgg |
306 |
Q |
| |
|
||| |
|
|
| T |
5585476 |
tgg |
5585478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 5897446 - 5897526
Alignment:
| Q |
529 |
ccaattccttcattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcatttgacataca |
609 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||| |||| || |||||| | ||||||||||||||| |
|
|
| T |
5897446 |
ccaattacttcattttggtaaaacaattgcttaatttgattttctgattgtcagctagataataaaatcatttgacataca |
5897526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 413 - 499
Target Start/End: Complemental strand, 5556863 - 5556775
Alignment:
| Q |
413 |
gaattgtggtgatagtgtttcattc--aaaacagaaatatataagttaatttataactataaacatcataatcaaactggaaacacaaa |
499 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
5556863 |
gaattgtggtgatagtgtttcattccgaaaaaagatatatataagttgatttataactatacacatcataaataaactagaaacacaaa |
5556775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 406 - 487
Target Start/End: Original strand, 5855260 - 5855345
Alignment:
| Q |
406 |
tcattgagaattgtggtgatagtgtttcattcaaaacagaaatatataagttaatttataac----tataaacatcataatcaaac |
487 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5855260 |
tcattgagaattataatgatagtgtttcattcaaaatagaaatatataagttgatttataactatatataaacatcataatcaaac |
5855345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 253680 - 253805
Alignment:
| Q |
104 |
cttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagagt |
203 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| | |||||| ||||||| |||||||| || ||||| |||| | |||| ||| ||||||| || |
|
|
| T |
253680 |
cttgttcaattgattggaattttttaagtatggaacttggatttgtttttgggcttggaattttcattggttcccttatatttttgaaacaatggagcgt |
253779 |
T |
|
| Q |
204 |
aagttattggaaactcgtagacaaaa |
229 |
Q |
| |
|
||||||| || ||||| ||||||||| |
|
|
| T |
253780 |
aagttatcggcaactcctagacaaaa |
253805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 5423138 - 5423081
Alignment:
| Q |
107 |
gttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat |
164 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5423138 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
5423081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 614 - 665
Target Start/End: Complemental strand, 5550521 - 5550470
Alignment:
| Q |
614 |
gatacaccaaatgatatattactatagtgtttttggtcttatttttaaatta |
665 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
5550521 |
gatacacctaatgatatattactttagtgtttttggtcttattttcaaatta |
5550470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5891041 - 5891089
Alignment:
| Q |
1 |
atttgaagcatcttcgtttga-ggtaatgatggactatatggacctcca |
48 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
5891041 |
atttgaagcatcttcgtttgaaggtaatgatggactatatggtcctcca |
5891089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5896893 - 5896940
Alignment:
| Q |
1 |
atttgaagcatcttcgttt-gaggtaatgatggactatatggacctcc |
47 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
5896893 |
atttgaagcatcttcgtttagaggtaatgatggactatatggtcctcc |
5896940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5557368 - 5557318
Alignment:
| Q |
1 |
atttgaagcatcttcgtttga-ggtaatgatggactatatggacctccatt |
50 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
5557368 |
atttgaagcatcttcatttgaaggtaatgatggactatatggtcctccatt |
5557318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 5345821 - 5345764
Alignment:
| Q |
107 |
gttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat |
164 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5345821 |
gttcaattgattggaacttcttaagtgtggagttgggatttatttttggctttggaat |
5345764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 5357357 - 5357402
Alignment:
| Q |
107 |
gttcaattgaatggaattttttaagtgtggaattgggatttatttt |
152 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
5357357 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttt |
5357402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 5363717 - 5363774
Alignment:
| Q |
107 |
gttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat |
164 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5363717 |
gttcaattgactggagtttcttaagtgtggagttgggatttatttttgggtttggaat |
5363774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 5379580 - 5379636
Alignment:
| Q |
108 |
ttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat |
164 |
Q |
| |
|
||||||||| |||||| | ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5379580 |
ttcaattgattggaatctcttaagtgtggagttgggatttatttttggctttggaat |
5379636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 5355243 - 5355300
Alignment:
| Q |
107 |
gttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat |
164 |
Q |
| |
|
||||||| || |||||||| |||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
5355243 |
gttcaatcgattggaatttcttaagtttggagttgggatttatttttggctttggaat |
5355300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5849819 - 5849860
Alignment:
| Q |
1 |
atttgaagcatcttcgtttga-ggtaatgatggactatatgg |
41 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
5849819 |
atttgaagcatcgtcgtttgaaggtaatgatggactatatgg |
5849860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 539 - 618
Target Start/End: Complemental strand, 5550942 - 5550865
Alignment:
| Q |
539 |
cattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcatttgacatacacatggatac |
618 |
Q |
| |
|
||||||||||||||| ||| |||||||| || ||||| |||| || ||| ||||||||||||||| |||||| ||||| |
|
|
| T |
5550942 |
cattttggtaaaacatttgtttaatttgatt--ctgattgtcagctaaatattgacatcatttgacacacacattgatac |
5550865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 103 - 354
Target Start/End: Complemental strand, 1481481 - 1481230
Alignment:
| Q |
103 |
gcttgttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaatcatcgttggtcccctcttgttttggaagaaatggagag |
202 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||| ||||||||||| ||||| ||||||||| | | ||| || ||| ||||||| ||||||| | |
|
|
| T |
1481481 |
gcttgttcagttgactggaattttctaagtgtggaattaggatttattttcggactaggaatcatcatcgttcctatcatgtcttggaagcaatggaggg |
1481382 |
T |
|
| Q |
203 |
taagttattggaaactcgtagacaaaattctatgtttgattttccggaggatgcattttgaatatgtaactgatagaggacagacatacagaattttaag |
302 |
Q |
| |
|
|||| |||||| || | || ||||||||||| || | ||| || |||||| || ||||||||| ||||||||||||||| ||||||| | ||||||| |
|
|
| T |
1481381 |
taaggtattggcaagttgtggacaaaattctttgctggatcttttcaaggatgaatcttgaatatgcaactgatagaggacaaacatacacagttttaag |
1481282 |
T |
|
| Q |
303 |
gtggtgatagaattaatgctagggattgtgataactattaaaataatgtttt |
354 |
Q |
| |
|
|||| |||| |||| |||||| ||||| |||| || ||| |||||||||| |
|
|
| T |
1481281 |
gtggcgataccattagtgctagtcattgtaataattagtaagataatgtttt |
1481230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 20329764 - 20329821
Alignment:
| Q |
107 |
gttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat |
164 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
20329764 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
20329821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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