View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_307 (Length: 218)
Name: NF0154_2D_low_307
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_307 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 14192082 - 14191867
Alignment:
| Q |
1 |
cagagcttgcgccttcataggacaaaatattgttagttccacatcctatcacaatattaggaaatgaaattgtaagtccattggtggattccaatgtaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14192082 |
cagagcttgcgccttcataggacaaaatattgttagttccacatcctatcacaatattaggaaatgaaactgtaagtccattggtggattccaatgtaag |
14191983 |
T |
|
| Q |
101 |
agtatcaacactaagatctcctcctgaatgtgaattatcaccataataagtagaatattcacaataatttttgtcattacatgaggtatcttccatagat |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14191982 |
agtgtcaacactaagatctcctcctgaatgtgaattatcaccataataagtagaatattcacaataatttttgtcattacatgaggtatcttccatagat |
14191883 |
T |
|
| Q |
201 |
tgacacaacattgatg |
216 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
14191882 |
tgacacaactttgatg |
14191867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 14183117 - 14182975
Alignment:
| Q |
28 |
tattgttagttccacatcctatcacaatattaggaaatgaaattgtaagtccattggtggattccaatgtaagagtatcaacactaagatctcctcctga |
127 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||||||||| | | ||||| ||| ||| || ||||||||||||||||||||||||| |||| || |
|
|
| T |
14183117 |
tattgtcagttccacatcctatcacagttttaggaaatgaaataggatgtccagtggaggactctaatgtaagagtatcaacactaagatttcctttcga |
14183018 |
T |
|
| Q |
128 |
atgtgaattatcaccataataagtagaatattcacaataatttt |
171 |
Q |
| |
|
|||||||||||||||||| || || |||||||||| |||||| |
|
|
| T |
14183017 |
ttgtgaattatcaccataagaa-tactatattcacaaaaatttt |
14182975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 40717874 - 40717697
Alignment:
| Q |
28 |
tattgttagttccacatcctatcacaatattaggaaatgaaattgtaagtccattggtggattccaatgtaagagtatcaacactaagatctcctcctga |
127 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||||| | ||| | | ||| || |||||||||||||||||||||||||||||| ||| |
|
|
| T |
40717874 |
tattgttggttccacatcctatcacagttttaggaaatgaaatatgaccaccagtagaggactctaatgtaagagtatcaacactaagatctccttgtga |
40717775 |
T |
|
| Q |
128 |
atgtgaattatcaccataataagtagaatattcacaataatttttgtcattacatgaggtatcttccatagattgaca |
205 |
Q |
| |
|
|||||||| ||| |||||| || ||| |||||||||| |||| | | ||||||| ||| ||||| || ||||||||| |
|
|
| T |
40717774 |
atgtgaatgatctccataagaaatagtatattcacaaaaattgtgggcattacaagagatatctctcacagattgaca |
40717697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 34302829 - 34302651
Alignment:
| Q |
27 |
atattgttagttccacatcctatcacaatattaggaaatgaaattgtaagtccattggtggattccaatgtaagagtatcaacactaagatctcctcctg |
126 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||||||| | | | ||| |||| ||||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
34302829 |
atattgttagttccacatcctataacagttttaggaaatgaaacaggacgcccagtggtagattccaatgtaagagtctcaagactaagatctccttgtg |
34302730 |
T |
|
| Q |
127 |
aatgtgaattatcaccataataagtagaatattcacaataatttttgtcattacatgaggtatcttccatagattgaca |
205 |
Q |
| |
|
||||||| | || ||||||| |||||||||| |||| ||||||||||| || ||||||||| || ||||||||| |
|
|
| T |
34302729 |
aatgtgattgattgccataattgatagaatattcgcaattttttttgtcattgcaagaggtatctctcacagattgaca |
34302651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 45645366 - 45645206
Alignment:
| Q |
28 |
tattgttagttccacatcctatcacaatattaggaaatgaaattgtaagtccattggtggattccaatgtaagagtatcaacactaagatctcctcctga |
127 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||| | |||| ||||||| |||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
45645366 |
tattgttatttccacatcctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtga |
45645267 |
T |
|
| Q |
128 |
atgtgaattatcaccataataagtagaatattcacaataatttttgtcattacatgaggta |
188 |
Q |
| |
|
|||||||| ||| ||||| | | | | |||||||||| || ||| |||||| || |||||| |
|
|
| T |
45645266 |
atgtgaatcatctccatagttaattgtatattcacaaaaaatttggtcattgcaagaggta |
45645206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 34646163 - 34646064
Alignment:
| Q |
35 |
agttccacatcctatcacaatattaggaaatgaaattgtaagtccattggtggattccaatgtaagagtatcaacactaagatctcctcctgaatgtgaa |
134 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||| | | ||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34646163 |
agttccacaacctatcactattttaggaaatgaaacaggacttccgctggtggattccaatgaaagagtatcaacactaagatctccttgtgaatgtgaa |
34646064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 34665857 - 34665758
Alignment:
| Q |
35 |
agttccacatcctatcacaatattaggaaatgaaattgtaagtccattggtggattccaatgtaagagtatcaacactaagatctcctcctgaatgtgaa |
134 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||| | | |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34665857 |
agttccacaacctatcactgttttaggaaatgaaacaggacttccactggtggattccaatgaaagagtatcaacactaagatctccttgtgaatgtgaa |
34665758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 19649429 - 19649469
Alignment:
| Q |
82 |
tggtggattccaatgtaagagtatcaacactaagatctcct |
122 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
19649429 |
tggtggaatccaatgtaagagtctcaacactaagttctcct |
19649469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1510 times since January 2019
Visitors: 2192