View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_309 (Length: 216)
Name: NF0154_2D_low_309
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_309 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 27004703 - 27004783
Alignment:
| Q |
20 |
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatat |
100 |
Q |
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| T |
27004703 |
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatat |
27004783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 27005526 - 27005447
Alignment:
| Q |
92 |
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg |
171 |
Q |
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| T |
27005526 |
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg |
27005447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 33708776 - 33708698
Alignment:
| Q |
93 |
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg |
171 |
Q |
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| T |
33708776 |
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtg |
33708698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 33714611 - 33714533
Alignment:
| Q |
93 |
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg |
171 |
Q |
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| T |
33714611 |
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtg |
33714533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 27005406 - 27005462
Alignment:
| Q |
160 |
gctgagttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc |
216 |
Q |
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| T |
27005406 |
gctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc |
27005462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 36810776 - 36810708
Alignment:
| Q |
92 |
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaagg |
160 |
Q |
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| T |
36810776 |
ttcctatatttgttgactccattctgatctcagcgagcaaatgaaagttcctaaggagtgcaaagaagg |
36810708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 37580580 - 37580511
Alignment:
| Q |
92 |
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggc |
161 |
Q |
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| T |
37580580 |
ttccaattcctgttgactccattttgatctcagtgagtaaaggacagttcttaaggagtgcaaacaaggc |
37580511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 36810656 - 36810700
Alignment:
| Q |
160 |
gctgagttggtgtctataaacctcagcggttgtcaccagctcacc |
204 |
Q |
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| T |
36810656 |
gctgatttggtgtctataaacgtcagcggttgttaccagctcacc |
36810700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 37579765 - 37579845
Alignment:
| Q |
20 |
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatat |
100 |
Q |
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| T |
37579765 |
cttccccgtattagggttgcagactattctcaaaaacaccactatatcatcaaccttgacctctctgacttgttcaaatat |
37579845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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