View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0154_2D_low_311 (Length: 216)
Name: NF0154_2D_low_311
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0154_2D_low_311
[» ] scaffold0028 (1 HSPs)
[» ] scaffold0074 (1 HSPs)
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 21191108 - 21191297
Alignment:
Q
9
tcagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactt
108
Q
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
T
21191108
tcagagaagttgaagacattatggaaataaggggaccaaacatacatagaagggatcagaaataaactctacaacattattgaagagctcaagtttactt
21191207
T
Q
109
tataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt
198
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
21191208
tataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt
21191297
T
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Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 36466428 - 36466236
Alignment:
Q
6
gtatcagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagttta
105
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
36466428
gtatcagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagttta
36466329
T
Q
106
ctttataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt
198
Q
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
T
36466328
ctttataaacattcatagcttgttggatttgatgaaagtgagtggattgatatgttggcaatggcatgcaaatttgtaacaaccattcaattt
36466236
T
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Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 36471206 - 36471278
Alignment:
Q
126
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt
198
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
36471206
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccgttcaattt
36471278
T
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Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 29389630 - 29389558
Alignment:
Q
126
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt
198
Q
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
T
29389630
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcgaatttgtaacaaccattcaattt
29389558
T
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Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 8697363 - 8697461
Alignment:
Q
24
acattatggaaataagg-ggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat
121
Q
|||||| ||| |||||| |||||| ||||| | |||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||| ||||||||
T
8697363
acattaaggagataaggaggaccatacatatgtagaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat
8697461
T
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Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 18388615 - 18388688
Alignment:
Q
48
acatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat
121
Q
|||||||| |||| ||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||
T
18388615
acatacatggaagagatcagagataaactctacaacataattaaagagcttaagtttattttataaacgttcat
18388688
T
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Target Overview ] [
Alignment Overview ]
Target: scaffold0028 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 18593 - 18528
Alignment:
Q
57
gaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcata
122
Q
|||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||| |||||||||
T
18593
gaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcata
18528
T
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Alignment Overview ]
Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 20125 - 20189
Alignment:
Q
57
gaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat
121
Q
|||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||| ||||||||
T
20125
gaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat
20189
T
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Alignment Overview ]
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