View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_312 (Length: 216)
Name: NF0154_2D_low_312
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_312 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17106847 - 17106952
Alignment:
| Q |
1 |
catttcatctggttatgatcttgtcatcttgtaatgttataacatcatcaaggcttgatgc------atgtgttcgtacgtatgtgtgttcaatttcatt |
94 |
Q |
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| T |
17106847 |
catttcatcttgttatgatcttgtcatcttgtaatgttataacatcatcaaggcttgatgcatctcaatgtgttcttacgtatgtgtgttcaatttcatt |
17106946 |
T |
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| Q |
95 |
tgcttt |
100 |
Q |
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|||||| |
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| T |
17106947 |
tgcttt |
17106952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 17106711 - 17106638
Alignment:
| Q |
133 |
tctcaataaattcaaaacaaacaattatagtagataagatattcatattctctatacatcaaactctgatgtcc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
17106711 |
tctcaataaattcaaaacaaacaattatagtagataagatattcatattttctatacatcaaactctgttgtcc |
17106638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 17106770 - 17106731
Alignment:
| Q |
98 |
tttgcgaacacattaatcactgtcaaatttaaaattctca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17106770 |
tttgcgaacacattaatcactgtcaaatttaaaattctca |
17106731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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