View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_319 (Length: 214)
Name: NF0154_2D_low_319
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_319 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 14944477 - 14944675
Alignment:
| Q |
3 |
atatatattacaaggtcattcagccctactatcaaagcaaa---atccttcccttccctagctagtaccatagaaatgtttcccttgttgtgttactctc |
99 |
Q |
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| T |
14944477 |
atatatattacaaggtcattcagccctactatcaaagcaaattaatccttcccttccctagctagtaccatagaaatgtttcccttgttgtgttactctc |
14944576 |
T |
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| Q |
100 |
tccttttctttattttcctatttacttgcaaacttattttccgaaccagaagaaaattcagaaaccttccaccaggtccaccatctcttcccataattg |
198 |
Q |
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| T |
14944577 |
tcctttttcttattttccttcttacttgcaaacttattttccaaaccagaagaaaattcagaaaccttcccccaggtccaccatttcttcccataattg |
14944675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 38953924 - 38953973
Alignment:
| Q |
149 |
aagaaaattcagaaaccttccaccaggtccaccatctcttcccataattg |
198 |
Q |
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| T |
38953924 |
aagaaaattcaaaaaccttccaccaggtccaacttctcttcctataattg |
38953973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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