View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_32 (Length: 690)

Name: NF0154_2D_low_32
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_32
NF0154_2D_low_32
[»] chr4 (1 HSPs)
chr4 (18-669)||(28226978-28227628)


Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 18 - 669
Target Start/End: Original strand, 28226978 - 28227628
Alignment:
Q  18 atgaacggtcagatttcaaatatgtttagccgcaatgttttgctcaatcatgttcgggcaagagttttgccaagatattgttgaatatgttcctcttgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28226978 atgaacggtcagatttcaaatatgtttagccgcaatgttttgctcaatcatgttcgggcaagagttttgccaagatattgttgaatatgttcctcttgtg 28227077  T
Q  118 tacctgactaactgtctattattatctgctatacattggtatttcttgtattgtaaaaagctgtaatttcattgagtttatatattttgcctagaatttc 217  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227078 tacctgactaactgtctattattat-tgttatacattggtattccttgtattgtaaaaagctgtaatttcattgagtttatatattttgcctagaatttc 28227176  T
Q  218 aacgtgatagaaggaatggtatagaaaatattccatcattgtaagtctcgaacttcttgcttacatgataaatattattggataaaatacaaaaaataag 317  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28227177 aacctgatagaaggaatggtatagaaaatattccatcattgtaagtctcgaacttcttgcttacatgataaatattattggataaaatacaaaa-ataag 28227275  T
Q  318 gtgtctgaggataataaagttttgaaccattgtattattgtgtcttttctttataatatttatttgcaatttacaagtgaaatgccagcggacatgagtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227276 gtgtctgaggataataaagttttgaaccattgtattattgtgtcttttctttataatatttatttgcaatttacaagtgaaatgccagcggacatgagtt 28227375  T
Q  418 atacatagtacttcaggtcaaatactaggaacaagacatataagagagcagcagcacatgttacttttttgtgtgaataaaaagcagatgttacttaaag 517  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28227376 atacatagtacttcaggtcaaatactaggaacaggacatataagagagcagcagcacatgttacttttttgtgtgaataaaaagcagatgttacttaaag 28227475  T
Q  518 cacacatcgacagtactttggacaatgtatttagagctgggatgagttataatcgtgnnnnnnngtttgcaccctaaatttgatcattaggctttaattg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||    
T  28227476 cacacatcgacagtactttggacaatgtatttagagctgggatgagtcataatcgtgtttttttgtttgcaccctaaatttgatcattaggctttaattg 28227575  T
Q  618 gaatgacagaaggggg-aaaaaataatgaatactatggaaaggacaaaggagg 669  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28227576 gaatgacagaagggggaaaaaaataatgaatactatggaaaggacaaaggagg 28227628  T

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